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berkeley_reactor_200306_biofilm_scaffold_22810

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Displaying items 121-147 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_22810_120
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126732..127295)
DNA (564bp) protein (188aa)
GCN5-related N-acetyltransferase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IPY8_METNO
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACL56638.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_22810_121
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127408..128538)
DNA (1131bp) protein (377aa)
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IV91_POLGS
pyridoxal-dependent decarboxylase, pyridoxal binding domain-containing protein
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein {ECO:0000313|EMBL:ADZ71422.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_22810_122
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129184..129603)
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMW6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57931.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_22810_123
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129603..129791)
DNA (189bp) protein (63aa)
YcfA family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMW5_9RHIZ
YcfA family protein {ECO:0000313|EMBL:EHK57930.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_22810_124
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129864..130565)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TYG6_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE11504.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
berkeley_reactor_200306_biofilm_scaffold_22810_125
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130937..131626
DNA (690bp) protein (230aa)
Probable septum site-determining protein MinC n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HUX3_9BRAD
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
septation inhibitor protein
berkeley_reactor_200306_biofilm_scaffold_22810_126
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131650..132465
DNA (816bp) protein (272aa)
Site-determining protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSN2_9RHIZ
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
septum site-determining protein MinD
berkeley_reactor_200306_biofilm_scaffold_22810_127
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132462..132737
DNA (276bp) protein (92aa)
Cell division topological specificity factor n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSN3_9RHIZ
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
minE; cell division topological specificity factor MinE
berkeley_reactor_200306_biofilm_scaffold_22810_128
bacterium YEK0313, Bacteria

Not on your lists

comp(132962..134590)
DNA (1629bp) protein (543aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036B94F8
Multidrug resistance protein stp {ECO:0000313|EMBL:CEJ14945.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
MFS transporter
berkeley_reactor_200306_biofilm_scaffold_22810_129
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134706..135320
DNA (615bp) protein (205aa)
Putative TetR-family transcriptional regulator n=3 Tax=Bordetella RepID=K0N1Y2_BORBM
TetR family transcriptional regulator
Putative TetR-family transcriptional regulator {ECO:0000313|EMBL:CAE43112.1}; TaxID=257313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251).;"
berkeley_reactor_200306_biofilm_scaffold_22810_130
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135625..137430
DNA (1806bp) protein (602aa)
multidrug ABC transporter ATPase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003692EC0
ABC transporter related protein {ECO:0000313|EMBL:KFC67480.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
exsA; MsbA-like saccharide exporting ABC transporter ATP-binding/permease subunits
berkeley_reactor_200306_biofilm_scaffold_22810_131
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137531..137767
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000347F76E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX26782.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
berkeley_reactor_200306_biofilm_scaffold_22810_132
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137764..138057
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000381EC87
plasmid stabilization system protein
Plasmid stabilization system {ECO:0000313|EMBL:ABD89656.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
berkeley_reactor_200306_biofilm_scaffold_22810_133
bacterium YEK0313, Bacteria

Not on your lists

comp(138106..139398)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D717F7
Magnesium and cobalt efflux protein CorC {ECO:0000313|EMBL:CEJ10685.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
protein of unassigned function
berkeley_reactor_200306_biofilm_scaffold_22810_134
bacterium YEK0313, Bacteria

Not on your lists

comp(139438..140556)
DNA (1119bp) protein (373aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037029E4
3-dehydroquinate synthase
berkeley_reactor_200306_biofilm_scaffold_22810_135
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140553..141143)
DNA (591bp) protein (197aa)
Shikimate kinase, 3-dehydroquinate synthase {ECO:0000313|EMBL:ACB79753.1}; EC=2.7.1.71 {ECO:0000313|EMBL:ACB79753.1};; EC=4.2.3.4 {ECO:0000313|EMBL:ACB79753.1};; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
shikimate kinase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000377DD12
shikimate kinase, 3-dehydroquinate synthase
berkeley_reactor_200306_biofilm_scaffold_22810_136
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141354..141497
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQW8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61379.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
berkeley_reactor_200306_biofilm_scaffold_22810_137
bacterium YEK0313, Bacteria

Not on your lists

141497..142456
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031F3B70
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
tyrosine recombinase XerD
berkeley_reactor_200306_biofilm_scaffold_22810_138
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142687..143154)
DNA (468bp) protein (156aa)
AsnC family transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F5BCD0
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFG66697.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
leucine-responsive regulatory protein
berkeley_reactor_200306_biofilm_scaffold_22810_139
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143277..146372
DNA (3096bp) protein (1032aa)
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMJ1_9RHIZ
Integrase {ECO:0000313|EMBL:KFG66696.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_22810_140
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146528..146773
DNA (246bp) protein (82aa)
Prevent-host-death family protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J7V9_ACIMA
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:BAJ83176.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
berkeley_reactor_200306_biofilm_scaffold_22810_141
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146909..147610
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3HCG3_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:EQM68739.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_22810_142
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147737..148165
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003608E45
Bradyrhizobium elkanii strain UASWS1015 Contig183, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45898.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_22810_143
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148264..148629
DNA (366bp) protein (122aa)
YCII-related domain-containing protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YAY7_9BRAD
YCII-related domain-containing protein {ECO:0000313|EMBL:EHR05539.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_22810_144
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148674..149117
DNA (444bp) protein (148aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UJU7_SINMW
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ABR63927.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
berkeley_reactor_200306_biofilm_scaffold_22810_145
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149200..149928)
DNA (729bp) protein (243aa)
Probable ribitol 2-dehydrogenase protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FYP1_9RHIZ
Probable ribitol 2-dehydrogenase protein {ECO:0000313|EMBL:EAU40267.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_22810_146
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149987..150694)
DNA (708bp) protein (236aa)
ABC transporter related n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5Q2_OCHA4
ABC transporter {ECO:0000313|EMBL:KJC50500.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ABC transporter
Displaying items 121-147 of 147 in total

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