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berkeley_reactor_200306_biofilm_scaffold_22810

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Displaying items 61-90 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_22810_61
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64058..65557
DNA (1500bp) protein (500aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F3H8_9RHIZ
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:CCV06396.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Polar amino acid ABC transporter inner membrane subunit
berkeley_reactor_200306_biofilm_scaffold_22810_62
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65670..66926
DNA (1257bp) protein (419aa)
Amidase, hydantoinase/carbamoylase {ECO:0000313|EMBL:CCE96276.1}; EC=3.5.1.6 {ECO:0000313|EMBL:CCE96276.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Amidase, hydantoinase/carbamoylase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7P6_RHIFH
amaB; amidase, hydantoinase/carbamoylase
berkeley_reactor_200306_biofilm_scaffold_22810_63
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(67056..68051)
DNA (996bp) protein (332aa)
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:KJL28813.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components id=7720689 bin=CNBR_ACT species=Microbacterium testaceum genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
ribose/xylose/arabinose/galactoside ABC transporters, permease components
berkeley_reactor_200306_biofilm_scaffold_22810_64
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(68044..68853)
DNA (810bp) protein (270aa)
Galactose/methyl galactoside import ATP-binding protein MglA {ECO:0000313|EMBL:KJL28814.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KJL28814.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
ABC-type sugar transport system, ATPase component id=7720685 bin=CNBR_ACT species=Microbacterium testaceum genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
sugar ABC transporter ATPase
berkeley_reactor_200306_biofilm_scaffold_22810_65
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(68850..69803)
DNA (954bp) protein (318aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NCY0_MICTS
TMAO reductase system periplasmic protein TorT {ECO:0000313|EMBL:KJL28815.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
sugar ABC transporter periplasmic protein
berkeley_reactor_200306_biofilm_scaffold_22810_66
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69909..71087)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003175D4C
Uncharacterized protein {ECO:0000313|EMBL:CDX55413.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_22810_67
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71251..72456
DNA (1206bp) protein (402aa)
ROK family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I036_9RHIZ
ROK family protein {ECO:0000313|EMBL:EHK53648.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ROK family protein
berkeley_reactor_200306_biofilm_scaffold_22810_68
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72499..73536)
DNA (1038bp) protein (346aa)
hydrolase glyoxylase n=1 Tax=Rhizobium giardinii RepID=UPI00036775DC
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJJ28672.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
metallo-beta-lactamase family hydrolase protein
berkeley_reactor_200306_biofilm_scaffold_22810_69
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73620..74285)
DNA (666bp) protein (222aa)
Peroxiredoxin n=1 Tax=Rhizobium sp. CF142 RepID=J1STU3_9RHIZ
Peroxiredoxin {ECO:0000313|EMBL:EJJ28673.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
antioxidant protein
berkeley_reactor_200306_biofilm_scaffold_22810_70
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74425..76113
DNA (1689bp) protein (563aa)
DNA-binding transcriptional activator of the SARP family n=1 Tax=Rhizobium sp. CF142 RepID=J2L6L1_9RHIZ
DNA-binding transcriptional activator of the SARP family {ECO:0000313|EMBL:EJJ28674.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
regulatory protein
berkeley_reactor_200306_biofilm_scaffold_22810_71
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76193..76822
DNA (630bp) protein (210aa)
amino acid transporter n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5605
lysine exporter protein LysE/YggA
Amino acid transporter {ECO:0000313|EMBL:KGY59952.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
berkeley_reactor_200306_biofilm_scaffold_22810_72
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76970..77845)
DNA (876bp) protein (292aa)
Mlr1271 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98KY0_RHILO
hypothetical protein
Mlr1271 protein {ECO:0000313|EMBL:BAB48683.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_22810_73
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77969..78787)
DNA (819bp) protein (273aa)
AraC family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI00037CF620
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:AID30707.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_22810_74
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78935..79285
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF67645.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
berkeley_reactor_200306_biofilm_scaffold_22810_75
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79350..80123)
DNA (774bp) protein (258aa)
3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:ABI61825.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ABI61825.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTM6_GRABC
berkeley_reactor_200306_biofilm_scaffold_22810_76
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80261..81163
DNA (903bp) protein (301aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium radiobacter RepID=UPI00037DBD5D
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF67045.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
Putative HTH-type transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_22810_77
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81225..82145)
DNA (921bp) protein (307aa)
Transcriptional regulator, LysR family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T7D9_CAUSK
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABZ69677.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
berkeley_reactor_200306_biofilm_scaffold_22810_78
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82353..82994
DNA (642bp) protein (214aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2H8E5_BURVI
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KGM34720.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
short chain dehydrogenase family protein
berkeley_reactor_200306_biofilm_scaffold_22810_79
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83008..84000
DNA (993bp) protein (331aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Gluconobacter oxydans H24 RepID=K7SSK3_GLUOY
Amidohydrolase 2 {ECO:0000313|EMBL:GAN55699.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
TIM-barrel fold metal-dependent hydrolase
berkeley_reactor_200306_biofilm_scaffold_22810_80
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84005..84304
DNA (300bp) protein (100aa)
Transcriptional regulator, XRE family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IQM4_METNO
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACL60536.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_22810_trna_1
unknown

Not on your lists

comp(84466..84552)
DNA (87bp)
transferRNA Ser
berkeley_reactor_200306_biofilm_scaffold_22810_81
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84982..86136
DNA (1155bp) protein (385aa)
Extracellular solute-binding protein family 1 n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EU50_9RHIZ
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDX13103.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
family 1 extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_22810_82
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86133..86984
DNA (852bp) protein (284aa)
UPI0003CF638B related cluster n=1 Tax=unknown RepID=UPI0003CF638B
Uncharacterized protein {ECO:0000313|EMBL:ESY64613.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
IclR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_22810_83
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87029..88066
DNA (1038bp) protein (346aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y213_MESOW
periplasmic binding protein/LacI transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:ESY82332.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
berkeley_reactor_200306_biofilm_scaffold_22810_84
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88419..89405
DNA (987bp) protein (329aa)
Inner-membrane translocator n=2 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y214_MESOW
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AEH87130.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
berkeley_reactor_200306_biofilm_scaffold_22810_85
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89395..90903
DNA (1509bp) protein (503aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
UPI0003CEE24F related cluster n=1 Tax=unknown RepID=UPI0003CEE24F
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_22810_86
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91102..92088
DNA (987bp) protein (329aa)
ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FEW1_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:ESX70569.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_22810_87
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92121..92906
DNA (786bp) protein (262aa)
Short-chain dehydrogenase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FHK7_9RHIZ
Short-chain dehydrogenase {ECO:0000313|EMBL:ESX70568.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_22810_88
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92946..94151
DNA (1206bp) protein (402aa)
UPI0003CEF8A1 related cluster n=1 Tax=unknown RepID=UPI0003CEF8A1
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:CDX56649.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
L-carnitine dehydratase/bile acid-inducible protein F
berkeley_reactor_200306_biofilm_scaffold_22810_89
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94151..94951
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:ESY82337.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ESY82337.1};; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
UPI0003CDDB20 related cluster n=1 Tax=unknown RepID=UPI0003CDDB20
enoyl-CoA hydratase/isomerase
Displaying items 61-90 of 147 in total

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