name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_22810_1
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3..2765)
|
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036C61AE
cell division protein FtsK
Cell divisionFtsK/SpoIIIE {ECO:0000313|EMBL:ABR62999.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
|
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berkeley_reactor_200306_biofilm_scaffold_22810_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2911..3615)
|
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J6U5_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:KDP75656.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_3
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3745..4329
|
Transcription regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q983U1_RHILO
transcriptional regulator
Transcription regulator {ECO:0000313|EMBL:BAB53789.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
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berkeley_reactor_200306_biofilm_scaffold_22810_4
Gluconacetobacter sp. SXCC-1, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4607..4798
|
membrane protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035E6636
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGG75818.1}; TaxID=1004836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter sp. SXCC-1.;"
|
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berkeley_reactor_200306_biofilm_scaffold_22810_5
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4795..6321
|
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000362EB18
Na+/solute symporter
Na+/solute symporter {ECO:0000313|EMBL:ACB95975.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
|
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berkeley_reactor_200306_biofilm_scaffold_22810_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6389..8056)
|
major facilitator transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488A82
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:GAD49797.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
general substrate transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8284..9018)
|
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13E99_RHOPS
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABE37590.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
|
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berkeley_reactor_200306_biofilm_scaffold_22810_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9015..9440)
|
Uncharacterized protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SH01_RHIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS26556.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
|
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berkeley_reactor_200306_biofilm_scaffold_22810_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9440..10615)
|
Thiolase protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SXH9_RHIET
thiolase protein
Thiolase protein {ECO:0000313|EMBL:AGS26557.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_10
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10642..12138)
|
ribose ABC transporter ATP-binding protein (EC:3.6.3.17)
Monosaccharide ABC transporter ATP-binding protein, CUT2 family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EL06_BRASB
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAJ97074.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
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berkeley_reactor_200306_biofilm_scaffold_22810_11
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12135..13232)
|
Strictosidine synthase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WN16_VEREI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE45214.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13229..15346)
|
ABC transporter n=1 Tax=Nitratireductor indicus C115 RepID=K2P2P7_9RHIZ
ABC transporter {ECO:0000313|EMBL:EKF41601.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ABC transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_13
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15413..16441)
|
ABC transporter substrate-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PKK5_9RHIZ
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJE45212.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
|
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berkeley_reactor_200306_biofilm_scaffold_22810_14
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16537..17538)
|
ABC transporter permease (EC:3.6.3.17)
Inner-membrane translocator n=1 Tax=Nitratireductor indicus C115 RepID=K2N2I3_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KGF70910.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
|
Not on your lists |
comp(17535..19061)
|
Citrate synthase id=4840593 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
menE; citrate synthase
Tax=GWA2_Rokubacteria_73_35_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria
|
Not on your lists |
19285..19896
|
Transcriptional regulator, Cro/CI family id=3638049 bin=GWF2_Methylomirabilis_70_14 species=Herbaspirillum frisingense genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
XRE family transcriptional regulator
Tax=GWA2_Rokubacteria_70_23_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_17
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20011..20646
|
LuxR family transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289592A
LuxR family transcriptional regulator {ECO:0000313|EMBL:KHA64866.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
two component LuxR family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_18
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20688..21404)
|
Putative membrane protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H0L4_9CAUL
Putative membrane protein {ECO:0000313|EMBL:EJL28793.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
mgtC; Mg2+ transporter-C family protein
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_19
unknown
|
Not on your lists |
comp(21444..21752)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_22810_20
unknown
|
Not on your lists |
comp(21787..21969)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_22810_21
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21980..23608)
|
Putative divalent cation transporter n=1 Tax=Burkholderia sp. SJ98 RepID=K8REY5_9BURK
Natural resistance-associated macrophage protein {ECO:0000313|EMBL:GAN50983.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
natural resistance-associated macrophage family protein
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_22
unknown
|
Not on your lists |
comp(23808..24023)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_22810_23
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24353..24631
|
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000380EEF7
Uncharacterized protein {ECO:0000313|EMBL:EGD58306.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_24
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24800..25612
|
glucose-1-dehydrogenase (EC:1.1.1.47)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) RepID=Q0BDA4_BURCM
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABI87869.1}; TaxID=339670 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia; cepacia (strain AMMD)).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_25
Streptomyces venezuelae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(25621..26391)
|
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00038173E6
alpha or beta hydrolase fold
Alpha or beta hydrolase fold {ECO:0000313|EMBL:CCA60606.1}; TaxID=953739 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 /; JCM 4526 / NBRC 13096 / PD 04745).;"
|
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berkeley_reactor_200306_biofilm_scaffold_22810_26
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26388..27512)
|
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00036FBF75
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:BAP43236.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_27
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27509..28312)
|
hypothetical protein n=1 Tax=Pseudomonas putida RepID=UPI00037155BE
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDG53177.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
Putative UDP-glucose 4-epimerase
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_28
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28309..29670)
|
4-aminobutyrate aminotransferase n=1 Tax=Rhizobium meliloti RepID=UPI0003789732
4-aminobutyrate aminotransferase family protein {ECO:0000313|EMBL:EJK86664.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
aminotransferase
|
|
berkeley_reactor_200306_biofilm_scaffold_22810_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29683..30765)
|
Aminoglycoside phosphotransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVQ5_VARPE
aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ADU35288.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
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berkeley_reactor_200306_biofilm_scaffold_22810_30
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
31045..31773
|
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036FDF7C
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:GAN46535.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
|