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berkeley_reactor_200306_biofilm_scaffold_22810_27

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(27509..28312)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Pseudomonas putida RepID=UPI00037155BE similarity UNIREF
DB: UNIREF100
  • Identity: 55.5
  • Coverage: 265.0
  • Bit_score: 285
  • Evalue 3.10e-74
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDG53177.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.9
  • Coverage: 258.0
  • Bit_score: 259
  • Evalue 3.30e-66
Putative UDP-glucose 4-epimerase similarity KEGG
DB: KEGG
  • Identity: 50.8
  • Coverage: 258.0
  • Bit_score: 235
  • Evalue 1.80e-59

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Taxonomy

Halomonas sp. A3H3 → Halomonas → Oceanospirillales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 804
ATGAAGCCGCTCCTGCTCGTCACCGGCGCCGCCGGACGTGTCGGGCGCCTGCTCCGGCCGGTCCTGGCAGAACGCTACGCCCTGCGGCTGCTCGACCTTGCCGACCCAGGCGCGTCGGCGCAGGAGGAGGCGATCCTGGGTGACCTTGCCGACCCGGCGATGGCGCGCCGGGCCGTGGCCGGCGCCGCCGGCGTGCTGCACCTGGCCGGGCTCGTCGGCCCGGACTTCGGCTTCGAGGCGACGCTGCGGCCGAACTATCTCGGCCTCGTCACGCTGCTGGAAGCCTGCCGGGCCGCCCGCTGTCCGCGCTTCGTCTTCGCCAGCAGCCACCACGTCGTCGGGCTCCACGCCGCCGCCGACGCGCCCTTCGATGCGGCCGCGCCGCTCGCCCCGGACGGTTTCTACGGCCTCAGCAAGGCCTTCGGCGAGGCAGCGTGCGGCCTCTATGCCCGCCGCTTCGCCATGCCTACCCTGATCATCCGTATCGGCAATGCCGACCCGGAGGTGGCCGATGCGCGCCGTGCCCGCATGTGGGTGAGCGCCCGCGACCTCGCCGCCCTGGTCGACATCGGCATGACGGCGCAGGGCCTCGCCTGCGAGACCGTCTATGGCGTCTCCCGCGCCTCGGATCCGCTCTTCGCCGATGCCGCGGCGGCCCGCCTCGGCTACCGGCCTCGAGACGACTCGCGCGACCATCATGCTGCCGGCTTCCGGCCGTCCGCCGCTCTCGGGCCGGCGGACGGCGCCGATCGGGTCGGCGGCTTCTTCGCCACGCGGCCCCTGCCCCATCCCGGTGAGCCATGA
PROTEIN sequence
Length: 268
MKPLLLVTGAAGRVGRLLRPVLAERYALRLLDLADPGASAQEEAILGDLADPAMARRAVAGAAGVLHLAGLVGPDFGFEATLRPNYLGLVTLLEACRAARCPRFVFASSHHVVGLHAAADAPFDAAAPLAPDGFYGLSKAFGEAACGLYARRFAMPTLIIRIGNADPEVADARRARMWVSARDLAALVDIGMTAQGLACETVYGVSRASDPLFADAAAARLGYRPRDDSRDHHAAGFRPSAALGPADGADRVGGFFATRPLPHPGEP*