ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_22810_69

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(73620..74285)

Top 3 Functional Annotations

Value Algorithm Source
Peroxiredoxin n=1 Tax=Rhizobium sp. CF142 RepID=J1STU3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.8
  • Coverage: 221.0
  • Bit_score: 420
  • Evalue 8.70e-115
Peroxiredoxin {ECO:0000313|EMBL:EJJ28673.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.8
  • Coverage: 221.0
  • Bit_score: 420
  • Evalue 1.20e-114
antioxidant protein similarity KEGG
DB: KEGG
  • Identity: 84.4
  • Coverage: 218.0
  • Bit_score: 397
  • Evalue 2.20e-108

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium sp. CF142 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGCCACTGCGAATCAACGACACGGCGCCCGACTTCACGGCCGAGACCACGGAAGGAACGATGTCGTTCCACGAATGGCTGGGCAAGGACTGGGGCATCCTGTTCTCGCACCCCAAGGACTACACCCCCGTCTGCACCACCGAGCTGGGCTACGTGGCGCGCCTGAAGCCCGAGTTCGACAAGCGCGGCATCAAGGTCGTCGGCCTGTCCGTCGATCCGGTCGAAAGGCATGCCGGATGGGCCAGGGACATCGCCGAGACCCAGGGCGTCGCGCCGAACTTTCCCATGATCGGCGACCCGACGCTGGCGGTGGCCAAGGCCTACGACATGCTGCCGGCCACGGCCGGCGAGAGCAGCGAAGGCCGCACCGCCGCCGACAACCAGACCGTGCGGGACGTCTATGTCATCGGGCCGGACAAGAAGATCAAGCTGGTGATATCCTATCCGATGACCACCGGCCGCAACTTCGACGAGGTGCTGCGTGTCGTCGACTCCCTGCAGCTCACCGCGAAGCATCGCCTTGCCACGCCCGCCAACTGGCGCCCCGGCGACGAGGTGATCATCGCCGGCTCGGTCTCCAACGACGAAGCGAAGCAGCTCTATCCGCAGGGCTGGAAGGAGCCCAAGCCCTATATCCGCATCGTGCCGCAGCCCGTGCTGACCTGA
PROTEIN sequence
Length: 222
MPLRINDTAPDFTAETTEGTMSFHEWLGKDWGILFSHPKDYTPVCTTELGYVARLKPEFDKRGIKVVGLSVDPVERHAGWARDIAETQGVAPNFPMIGDPTLAVAKAYDMLPATAGESSEGRTAADNQTVRDVYVIGPDKKIKLVISYPMTTGRNFDEVLRVVDSLQLTAKHRLATPANWRPGDEVIIAGSVSNDEAKQLYPQGWKEPKPYIRIVPQPVLT*