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berkeley_reactor_200306_biofilm_scaffold_22810_83

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 87029..88066

Top 3 Functional Annotations

Value Algorithm Source
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y213_MESOW similarity UNIREF
DB: UNIREF100
  • Identity: 84.6
  • Coverage: 338.0
  • Bit_score: 572
  • Evalue 2.80e-160
periplasmic binding protein/LacI transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 84.6
  • Coverage: 338.0
  • Bit_score: 572
  • Evalue 7.90e-161
LacI family transcriptional regulator {ECO:0000313|EMBL:ESY82332.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.6
  • Coverage: 338.0
  • Bit_score: 572
  • Evalue 3.90e-160

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Taxonomy

Mesorhizobium sp. LNHC221B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1038
ATGCCTGTCACCAAGTTCCTGAGCACCGCCGCCGCGCTGGCCGGGTTGCTGCTGCTGCCGGGCCAGGCGCCCGCGGCCGACGCGATGCCCAAGCGCATCGGCTACGTCACCAACTACGCCACGCATGAATGGTACCAGAACGTCATCAAGGGCATGAAGGCGCACGGCAAGGATCTCGGCATCGACGTCGAGGTGCAGGACGCCAATCTCGACATCGCCAAGCAGGTCGCCGCGGCGGAAGACTTCATCGCCAAGGGCGTCGACGTGCTGATCATCACGCCGGTGAACGAGGAAGGCGTGGTGCCGCTGCTGCGCAAGGCCAAGGCGGCCGGCATCCCGGTGGTGCTGGAGGGCAACCCGGTCAAGGGCATGACCCCCATGGTGGCGATCTGCGACTACGACACCGGCTATGCCGCCGGGGTCGCCGCCGGCGCCTACGCCAAGGACAAGCTCGGCGGCAAGGCGCGGGTGATGAATGTCGGCCTGAAGCTGCTGACCGCGACTCAGCTGCGCTCCATGGGCTTCATGGACGGGATGCACACCGTGCTGCCGGACGCCGTCATGGTCCACGACCTCGACGGCGGCGGCAATCCGGACCGGGCGCTGGAGGTCTCCTCCGCCGCGCTCGCCCAGAACGGCGACATCAACATCATCTACGGCATCAACGATTCCTCCTCGCTCGGCGGGCTGCAGGCCTGGAAGGCGGCGGGCAAATCGCAGGACGGGCTGCTCGTGGTCGGCACCGGCGGCGAGGGCCTCGCCTTCATCAACGCCATCGAGAAGGAGCCGTCCTATCGCATCGAGGCGGCGATGTTCCCGGAGAAGGAGGGCTACACCACCATCGACGCGGCGGTGAAGCTGTTCAACAAGCAGGAGGTGCCCCCGCACATCGTCAGCCCGACCGCGGCGGTGATCGGCGAGGACTGGAAGACGTTCTACGATTACGACGGCAGCACGCGGACGATCAAATGGGACGCGGTCAACGCGCTGGTGCCGCCGGCCAAATGCATGAAGACCGCGGCCGACCTGAAGAAGTAG
PROTEIN sequence
Length: 346
MPVTKFLSTAAALAGLLLLPGQAPAADAMPKRIGYVTNYATHEWYQNVIKGMKAHGKDLGIDVEVQDANLDIAKQVAAAEDFIAKGVDVLIITPVNEEGVVPLLRKAKAAGIPVVLEGNPVKGMTPMVAICDYDTGYAAGVAAGAYAKDKLGGKARVMNVGLKLLTATQLRSMGFMDGMHTVLPDAVMVHDLDGGGNPDRALEVSSAALAQNGDINIIYGINDSSSLGGLQAWKAAGKSQDGLLVVGTGGEGLAFINAIEKEPSYRIEAAMFPEKEGYTTIDAAVKLFNKQEVPPHIVSPTAAVIGEDWKTFYDYDGSTRTIKWDAVNALVPPAKCMKTAADLKK*