ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_5879_28

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(31891..32616)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI000366CB19 similarity UNIREF
DB: UNIREF100
  • Identity: 49.3
  • Coverage: 207.0
  • Bit_score: 208
  • Evalue 7.40e-51
transcriptional regulator, GntR family similarity KEGG
DB: KEGG
  • Identity: 42.1
  • Coverage: 235.0
  • Bit_score: 193
  • Evalue 5.30e-47
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGB73866.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 42.1
  • Coverage: 235.0
  • Bit_score: 193
  • Evalue 2.60e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 726
GTGGCGACAGGTGACGACGTGGACGAGGCTGCGACAACCGGGCACCCAGCGCCGGCCGTGGAGAAGCGGGCCGCCCGGCAGCGCCCCCTGCATGAAGCGGTGGTGGATCGGCTGCGCGACATGATCATCGAGGGCGATCTTCGCGTCGGCGACAGGTTGCACGACCTCAACCTGGCCGAGACGCTCAACGTGTCACGCACGCCGGTCCGCGAGGCCATCAAGCTCCTGGCGACGGAAGGGCTGGTCGACCTCCTGCCGGGGCGCGGCGCCCGCGTCGCGGCCCTGTCGGCCCAGACGGTCGGCGAGCTGCTGGAAGTCATCGGCGGGATCGAGCGCCATGCCTGCGAGCTGGCCGCCGAGCGCCTGACATCCCGCGACCTCGCCCGGCTGCAGCGCATGCACGAGCGCATGGCCGGCTATCACCGGGCCGGCGATCTCCACGCCTATTTCAAGCTGAACAACGAGATCCACGTCGCCATCGTCGCCGCCGCCAAGAACGCCACCCTGGCGGCCACCCATGCCGCGCTGATCCTCAAGGCCCGGCGCGGCCGTCACACCGCCCTGGCTTCCCAGGCCCGCTGGGCCGAGGCCATGGCCGAGCACGATCTCCTGATGCAGGCCCTCGCCGCGCGCGACGGCCGCAAGGCCGGCGAGATCATGCTGCAGCACGACCTGCGCACCAGGGCCGTGGTCCGGCAGATCCTGCAGGCTTCGGAGGGGCGATAG
PROTEIN sequence
Length: 242
VATGDDVDEAATTGHPAPAVEKRAARQRPLHEAVVDRLRDMIIEGDLRVGDRLHDLNLAETLNVSRTPVREAIKLLATEGLVDLLPGRGARVAALSAQTVGELLEVIGGIERHACELAAERLTSRDLARLQRMHERMAGYHRAGDLHAYFKLNNEIHVAIVAAAKNATLAATHAALILKARRGRHTALASQARWAEAMAEHDLLMQALAARDGRKAGEIMLQHDLRTRAVVRQILQASEGR*