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berkeley_reactor_200306_biofilm_scaffold_5879

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Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_5879_1
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..139)
DNA (138bp) protein (46aa)
Monosaccharide-transporting ATPase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JID1_9RHIZ
sugar uptake ABC transporter ATP-binding protein
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:EMG52038.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
berkeley_reactor_200306_biofilm_scaffold_5879_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

382..1323
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000360CCF6
DeoR family transcriptional regulator {ECO:0000313|EMBL:EKF43253.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
DeoR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_5879_3
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1331..2107)
DNA (777bp) protein (259aa)
3-oxoacyl-ACP reductase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F0A1
oxidoreductase glucose/ribitol oxidoreductase
Putative oxidoreductase putative Glucose/ribitol oxidoreductase {ECO:0000313|EMBL:CAL80220.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
berkeley_reactor_200306_biofilm_scaffold_5879_4
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2182..3159)
DNA (978bp) protein (326aa)
ABC transporter, periplasmic solute-binding protein n=2 Tax=Rhizobium meliloti RepID=F7XJV4_SINMM
ABC transporter substrate-binding protein
ABC transporter, periplasmic solute-binding protein {ECO:0000313|EMBL:AEH83282.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
berkeley_reactor_200306_biofilm_scaffold_5879_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3227..5638)
DNA (2412bp) protein (804aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000369215C
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGM32313.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_5879_6
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5646..6602)
DNA (957bp) protein (319aa)
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202};; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037F8BA1
berkeley_reactor_200306_biofilm_scaffold_5879_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6613..8619)
DNA (2007bp) protein (669aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380DFA0
cbbT; transketolase
berkeley_reactor_200306_biofilm_scaffold_5879_8
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8973..9686
DNA (714bp) protein (238aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2CS40_9RHIZ
GntR family transcriptional regulator protein
Transcriptional regulator {ECO:0000313|EMBL:EJK79864.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
berkeley_reactor_200306_biofilm_scaffold_5879_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9683..10594
DNA (912bp) protein (304aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Rhizobium sp. AP16 RepID=J2WB64_9RHIZ
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:KEA08197.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
dapAf3; dihydrodipicolinate synthase
berkeley_reactor_200306_biofilm_scaffold_5879_10
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10587..12104
DNA (1518bp) protein (506aa)
Aldehyde dehydrogenase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHU0_AGRRK
Aldehyde dehydrogenase {ECO:0000313|EMBL:KEA08196.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
dhaL; aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_5879_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12101..13447
DNA (1347bp) protein (449aa)
Putative dehydrogenase/oxidoreductase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M3T5_RHIL3
dehydrogenase/oxidoreductase
Putative dehydrogenase/oxidoreductase {ECO:0000313|EMBL:CAK12239.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
berkeley_reactor_200306_biofilm_scaffold_5879_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13528..14379
DNA (852bp) protein (284aa)
ABC-type proline/glycine betaine transport system, periplasmic component n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N5A2_RHILT
ABC-type proline/glycine betaine transport system, periplasmic component {ECO:0000313|EMBL:EJB03099.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
prox3; Glycine betaine-binding periplasmic protein Flags: Precursor
berkeley_reactor_200306_biofilm_scaffold_5879_13
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14456..15571
DNA (1116bp) protein (372aa)
glycine/betaine ABC transporter n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037F365C
Glycine betaine/L-proline ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEC77234.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
glycine betaine/L-proline ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_5879_14
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15585..16433
DNA (849bp) protein (283aa)
ABC transporter permease n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036AEF64
Glycine betaine ABC transporter permease protein {ECO:0000313|EMBL:GAJ93619.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
glycine betaine/L-proline ABC transporter
berkeley_reactor_200306_biofilm_scaffold_5879_15
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16430..17275
DNA (846bp) protein (282aa)
ABC transporter permease n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035C6179
Glycine betaine/L-proline transport system permease protein proW {ECO:0000313|EMBL:KEC77232.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
glycine betaine/L-proline ABC transporter permease protein
berkeley_reactor_200306_biofilm_scaffold_5879_16
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17304..18302
DNA (999bp) protein (333aa)
UPI0003CE7F4C related cluster n=1 Tax=unknown RepID=UPI0003CE7F4C
Hydroxyproline-2-epimerase {ECO:0000313|EMBL:ESY73427.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hydroxyproline-2-epimerase
berkeley_reactor_200306_biofilm_scaffold_5879_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18355..18936)
DNA (582bp) protein (194aa)
Dienelactone hydrolase-like enzyme n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VTM2_RHILT
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:EJC76691.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
dienelactone hydrolase
berkeley_reactor_200306_biofilm_scaffold_5879_18
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19154..20668
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H8C0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF86087.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
beta-lactamase
berkeley_reactor_200306_biofilm_scaffold_5879_19
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21056..21820)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DKM0_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:KJC55017.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_5879_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22079..23521)
DNA (1443bp) protein (481aa)
Type III restriction protein res subunit n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HRR2_9RHIZ
Type III restriction protein res subunit {ECO:0000313|EMBL:EHK56575.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
helicase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_5879_21
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23570..24202)
DNA (633bp) protein (211aa)
alkylated DNA repair protein n=1 Tax=Rhizobium loti RepID=UPI00036DAA0C
Alkylated DNA repair protein {ECO:0000313|EMBL:ESX75820.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
2OG-Fe(II) oxygenase
berkeley_reactor_200306_biofilm_scaffold_5879_22
Pseudomonas sp. 20_BN, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24413..25123
DNA (711bp) protein (237aa)
Phosphoribosyltransferase n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I6ZGM6_PSEST
Phosphoribosyl transferase domain-containing protein {ECO:0000313|EMBL:CDZ93745.1}; TaxID=1499686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 20_BN.;"
phosphoribosyltransferase
berkeley_reactor_200306_biofilm_scaffold_5879_23
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25163..26128
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XXQ3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMS39717.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
berkeley_reactor_200306_biofilm_scaffold_5879_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26316..27944
DNA (1629bp) protein (543aa)
Putative glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QRR9_9BRAD
Putative glyceraldehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:EGP06138.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_5879_25
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27979..28623)
DNA (645bp) protein (215aa)
TetR family transcriptional regulator n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DXQ6_9RHIZ
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:AIB16068.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
berkeley_reactor_200306_biofilm_scaffold_5879_26
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28669..29835
DNA (1167bp) protein (389aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Caulobacter sp. AP07 RepID=J3AGJ3_9CAUL
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EJL31521.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
beta-lactamase
berkeley_reactor_200306_biofilm_scaffold_5879_27
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29954..31558
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
phosphoenolpyruvate carboxykinase n=1 Tax=Kaistia granuli RepID=UPI00035D2B5B
phosphoenolpyruvate carboxykinase
berkeley_reactor_200306_biofilm_scaffold_5879_28
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31891..32616)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI000366CB19
transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGB73866.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_5879_29
unknown

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32682..32927
DNA (246bp) protein (82aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_5879_30
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32943..34241
DNA (1299bp) protein (433aa)
NMT1/THI5 like family protein
NMT1/THI5 like family protein {ECO:0000313|EMBL:AJZ63775.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
Displaying items 1-30 of 127 in total

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