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berkeley_reactor_200306_biofilm_scaffold_5879

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Displaying items 61-90 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_5879_61
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59582..60349)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM84 RepID=J3IY31_9PSED
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:KDR32144.1}; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_5879_62
bacterium UASB270, Bacteria

Not on your lists

comp(60361..61227)
DNA (867bp) protein (289aa)
Putative ABC transporter permease protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4P8_CALAS
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:GAK56161.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_5879_63
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(61227..62252)
DNA (1026bp) protein (342aa)
Putative ABC transporter permease protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4P9_CALAS
ABC transporter permease
Tax=CG_Anaero_02
berkeley_reactor_200306_biofilm_scaffold_5879_64
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(62310..63593)
DNA (1284bp) protein (428aa)
Putative ABC transporter substrate binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4Q0_CALAS
putative ABC transporter substrate binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:BAM00238.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
berkeley_reactor_200306_biofilm_scaffold_5879_65
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63807..64973)
DNA (1167bp) protein (389aa)
Putative dehydrogenase n=1 Tax=Pseudomonas sp. GM21 RepID=J2PG62_9PSED
putative oxidoreductase/dehydrogenase protein
Putative oxidoreductase /dehydrogenase protein {ECO:0000313|EMBL:AHK47231.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_5879_66
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64983..65936)
DNA (954bp) protein (318aa)
Transcriptional regulator n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LK21_BURGS
periplasmic binding s and sugar binding domain of LacI family protein
Periplasmic binding s and sugar binding domain of LacI family protein {ECO:0000313|EMBL:AJW93932.1}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
berkeley_reactor_200306_biofilm_scaffold_5879_67
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66120..66989)
DNA (870bp) protein (290aa)
endonuclease n=1 Tax=Rhizobium gallicum RepID=UPI00036F4CC2
Endonuclease {ECO:0000313|EMBL:KKB07904.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_5879_68
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67085..68224
DNA (1140bp) protein (380aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ79_STAND
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADH89215.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_5879_69
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68261..69469
DNA (1209bp) protein (403aa)
Racemase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JTY7_9PROT
acyl-CoA transferase/carnitine dehydratase-like conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHK46463.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_5879_70
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69482..70447
DNA (966bp) protein (322aa)
Dihydrodipicolinate synthetase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X9Y7_VARPD
dihydrodipicolinate synthetase family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
berkeley_reactor_200306_biofilm_scaffold_5879_71
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70557..72221
DNA (1665bp) protein (555aa)
UPI0003CE8FE7 related cluster n=1 Tax=unknown RepID=UPI0003CE8FE7
Alanine-phosphoribitol ligase {ECO:0000313|EMBL:ESW90158.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_5879_72
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72356..73141)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI0003768C80
Enoyl-CoA hydratase-isomerase {ECO:0000313|EMBL:EKE78950.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
enoyl-CoA hydratase/isomerase
berkeley_reactor_200306_biofilm_scaffold_5879_73
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73352..74833
DNA (1482bp) protein (494aa)
Aldehyde dehydrogenase n=2 Tax=Ochrobactrum intermedium RepID=C4WKI7_9RHIZ
Sorbosone dehydrogenase {ECO:0000313|EMBL:KKB76072.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
sorbosone dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_5879_74
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74883..76067
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003750BF0
Uncharacterized protein {ECO:0000313|EMBL:AHE56590.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
transporter
berkeley_reactor_200306_biofilm_scaffold_5879_75
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76052..76711)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000365D1D5
dimethylmenaquinone methyltransferase
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:AFK62565.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
berkeley_reactor_200306_biofilm_scaffold_5879_76
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76731..77540)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036388A1
ABC transporter permease {ECO:0000313|EMBL:ESY95168.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
binding-protein-dependent transport system inner membrane protein
berkeley_reactor_200306_biofilm_scaffold_5879_77
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77540..78406)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000373B316
ABC transporter permease {ECO:0000313|EMBL:ESY86757.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_5879_78
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78403..79503)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E8875
ABC transporter family protein {ECO:0000313|EMBL:AID28535.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_5879_79
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79794..80828)
DNA (1035bp) protein (345aa)
ABC transporter n=1 Tax=Kaistia granuli RepID=UPI000381AAFA
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:ETA71684.1}; Flags: Precursor;; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
spermidine/putrescine-binding periplasmic protein
berkeley_reactor_200306_biofilm_scaffold_5879_80
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80938..81714)
DNA (777bp) protein (259aa)
3-oxoacyl-ACP reductase n=1 Tax=Kaistia granuli RepID=UPI00036ED809
Putative oxidoreductase {ECO:0000313|EMBL:CDX28928.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_5879_81
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81722..83452)
DNA (1731bp) protein (577aa)
L-arabonate dehydratase {ECO:0000313|EMBL:CDX28926.1}; EC=4.2.1.25 {ECO:0000313|EMBL:CDX28926.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Dihydroxy-acid dehydratase (EC:4.2.1.9)
dihydroxy-acid dehydratase n=1 Tax=Kaistia granuli RepID=UPI000362F8A7
berkeley_reactor_200306_biofilm_scaffold_5879_82
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83583..84425
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000366891F
Uncharacterized protein {ECO:0000313|EMBL:KKB81636.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
IclR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_5879_83
Roseobacter litoralis, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84444..85403)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZGA4_ROSLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI94835.1}; TaxID=391595 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC; 15278 / OCh 149).;"
berkeley_reactor_200306_biofilm_scaffold_5879_84
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85400..86302)
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVX3_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55127.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_5879_85
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86404..86880
DNA (477bp) protein (159aa)
Transcription regulator AsnC-type-like protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVX2_9RHIZ
Transcription regulator AsnC-type-like protein {ECO:0000313|EMBL:EHK55126.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transcriptional regulator AsnC-type-like protein
berkeley_reactor_200306_biofilm_scaffold_5879_86
bacterium YEK0313, Bacteria

Not on your lists

comp(87190..87837)
DNA (648bp) protein (216aa)
glutathione S-transferase n=1 Tax=Pseudomonas fluorescens RepID=UPI000361B3DA
Glutathione S-transferase GstB {ECO:0000313|EMBL:CEJ11653.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
glutathione S-transferase
berkeley_reactor_200306_biofilm_scaffold_5879_87
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87906..88682)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JAW2_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAJ91342.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
berkeley_reactor_200306_biofilm_scaffold_5879_88
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88860..89744
DNA (885bp) protein (295aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAW1_AGRRK
HTH-type transcriptional regulator TrpI {ECO:0000313|EMBL:GAJ91341.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_5879_89
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89699..90664)
DNA (966bp) protein (322aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RNC1_RHORT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC24374.1}; Flags: Precursor;; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
berkeley_reactor_200306_biofilm_scaffold_5879_90
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90781..91515
DNA (735bp) protein (245aa)
Transcriptional regulator, ArsR family protein n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7CE63_STRBB
ArsR family transcriptional regulator protein
ArsR family transcriptional regulator protein {ECO:0000313|EMBL:AJD44403.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Displaying items 61-90 of 127 in total

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