ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_5879_88

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 88860..89744

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAW1_AGRRK similarity UNIREF
DB: UNIREF100
  • Identity: 76.5
  • Coverage: 293.0
  • Bit_score: 455
  • Evalue 2.50e-125
HTH-type transcriptional regulator TrpI {ECO:0000313|EMBL:GAJ91341.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.8
  • Coverage: 293.0
  • Bit_score: 456
  • Evalue 2.00e-125
transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 76.5
  • Coverage: 293.0
  • Bit_score: 455
  • Evalue 7.00e-126

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 885
ATGGCTCGCCGCATCCCGTCGCTGAACGCCCTGCGTGCCTTCGAGGCGGCGGGCCGGCATGGGCGGATGACGCTGGCTGCCGACGAGCTGGCCGTCACGCACAGCGCCGTCAGCCGCCAGGTGCAGCATCTGGAGAACGTCCTGGGCGTGCCGCTGTTCGAGGGGCCGAAGAACGGGCTGCGGCTCACCGAGGCTGGAACGCGGCTGCTTTCCGGACTGGTGTCGGCCTTCGACCAGATCGACATGGCCGTCAGGCAGGTGGCCGACATGCCGGACGGTCCGCTCGACGTATCCTGCCCCGGCACGTTCACCATGCGCTGGCTCATCCCGAGGCTCTACCGGTTCCAGGCGGCGCATCCCGGCATCGAGGTCCGGCTGACCTCTTCGTCCAGGCCGGTCGATTTCGCGCGCGACGGCTTCGACGTGGCAATCCGCGTCGGGGCCGGGCCCTGGCCGCAGGGGGCCGAGGTCGTCCCGCTCTTCGGCGAGCAGACCGGCCCCGTCCTGGCGCCGGCCCTGGCCCAGTCGGCGCCCCGGGACCTGGCGGGTGTCGCGGTGCTGCATTCGCGGACCCGGCGCCGTGCCTGGCCGGACTGGTGCGCGCGCTCGGGCACGCCGGGCGGCCATGCGCCGGGCATCGAGTACGAGCATTTCTACTTCATGCTGGAGGCGGCCTCCGCCGGGCTCGGCGTCTGCATCGCGCCCTGGCCGTTCGTCGCCGACGATGTCCGGTCCGGCCGGCTGGCGGCGCCGCGCGGCTTCATCGCCAGCGGGCAGGACTATGTCGCGCTGCGGCGGGCGCGCCGCCACCGGAAATCGTCGCTGTTCTGCGCGTGGCTTCAGGACGAGGCCCGGGATTTCGCCGCCGCGCCGCCGGGCTCCTGA
PROTEIN sequence
Length: 295
MARRIPSLNALRAFEAAGRHGRMTLAADELAVTHSAVSRQVQHLENVLGVPLFEGPKNGLRLTEAGTRLLSGLVSAFDQIDMAVRQVADMPDGPLDVSCPGTFTMRWLIPRLYRFQAAHPGIEVRLTSSSRPVDFARDGFDVAIRVGAGPWPQGAEVVPLFGEQTGPVLAPALAQSAPRDLAGVAVLHSRTRRRAWPDWCARSGTPGGHAPGIEYEHFYFMLEAASAGLGVCIAPWPFVADDVRSGRLAAPRGFIASGQDYVALRRARRHRKSSLFCAWLQDEARDFAAAPPGS*