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berkeley_reactor_200306_biofilm_scaffold_10611_93

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 99315..100196

Top 3 Functional Annotations

Value Algorithm Source
D-tagatose 3-epimerase {ECO:0000313|EMBL:EYR81146.1}; EC=5.3.1.- {ECO:0000313|EMBL:EYR81146.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.9
  • Coverage: 293.0
  • Bit_score: 496
  • Evalue 1.40e-137
D-tagatose 3-epimerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4F2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.9
  • Coverage: 293.0
  • Bit_score: 496
  • Evalue 9.70e-138
xylose isomerase domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 83.3
  • Coverage: 293.0
  • Bit_score: 496
  • Evalue 2.70e-138

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 882
ATGAATCCGATCGGCCTCATCTCCATGCAGTTCGCCCGGCCGTTCACGGCCGCGCATTTCCCGCTGTTCTCCCGCATGAAGCAGCTCGGCTACGACTTCGTCGAGCTCCTGGTGCCCGAGCCCGGCGAGCTCGACCTCGCCGCCGCCCGCGCCGCGCTGGCCGAGGCCGGGCTCGGCGTCGTGCTCGCCGCCCGCGTCAATCTCGATCGTAACCTGTCCTCCGGCGAGGATGTGCGGCACCGCGCCGGCATCGACTATCTCCGCTACGCCGCCGACTGCGCCGCGTCGCTCGGCGCTGATATCGTCGGCGGGCCGCTCACCGGCAACCCGCTGGTGTTCGCCGGCCGGCCGCCGGCGCCGGTCGCCGAGGAGGAGCGCCTCGCCCGCAAGGCGCGCTGCGTCGCCGGTCTGCGTGCGGCGGGGGACCATGCCGCTGCCGCCGGGGTGACGCTGGCGGTCGAGCCGCTGAACCGCTTCGAGAGCGACGTGCTCTGCACCACCCGGCAGGCGATCGAGCTGCTCGACGCGGTCGACCATCCCGCCGTGCGGCTGATGCTCGACACCTTCCACATGCACATGGAGGAAGCCTCCATCCCCGAGGCGATCCGCCTCGCCGGCGCCCGCGTCGTGCATTTCCAGGCCAACGAGAACCATCGCGGCTTTCCCGGCACCGGCGCCACCGACTGGGTCGCCGTCGGCCGGGCCCTGCACGAGATCGGCTATGCCGGCCCGATCTCGCTGGAGCCCTTCCGCCGCAACGACGACCGATTCGGCGTGCCGCTGGCGCAATGGCGGGCGCCGCACGAGGACGAGAGCGACCGGCTCGCCGCCAGCGCCGCCTTCATCCGCGCCCATCTCACCCTGACGGACTATCGGCGATGA
PROTEIN sequence
Length: 294
MNPIGLISMQFARPFTAAHFPLFSRMKQLGYDFVELLVPEPGELDLAAARAALAEAGLGVVLAARVNLDRNLSSGEDVRHRAGIDYLRYAADCAASLGADIVGGPLTGNPLVFAGRPPAPVAEEERLARKARCVAGLRAAGDHAAAAGVTLAVEPLNRFESDVLCTTRQAIELLDAVDHPAVRLMLDTFHMHMEEASIPEAIRLAGARVVHFQANENHRGFPGTGATDWVAVGRALHEIGYAGPISLEPFRRNDDRFGVPLAQWRAPHEDESDRLAASAAFIRAHLTLTDYRR*