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berkeley_reactor_200306_biofilm_scaffold_15188_1

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 3..1142

Top 3 Functional Annotations

Value Algorithm Source
Secretion protein HlyD n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JDA8_AGRRK similarity UNIREF
DB: UNIREF100
  • Identity: 62.5
  • Coverage: 363.0
  • Bit_score: 440
  • Evalue 1.40e-120
secretion protein HlyD similarity KEGG
DB: KEGG
  • Identity: 62.5
  • Coverage: 363.0
  • Bit_score: 440
  • Evalue 3.90e-121
Multidrug resistance protein MdtA {ECO:0000313|EMBL:GAJ92598.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.1
  • Coverage: 355.0
  • Bit_score: 440
  • Evalue 1.50e-120

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1140
ACCGTGGCCCAGCATGCGATCACCGTCGGCCAGCAGGGGCCGATCGCCGTGCTGAGCGCGCCGGCGGCGGCGGCCGACGTGCCGGTCTATGTCGAGGGCGTCGGCACGGCGCAGGCCTTCAACACGGTGACGGTGCGCCCGCAGGTCGACGGCCGCCTGGTCGAGGTGGCGTTCCAGGAGGGCCAGGACGTCAGGAAGGGCGACGTCCTCGCCCGCATCGACGACCGGACCTATCGGGCCGAGCTCGACCAGGCCGTGGCCAAGCAGGCGCAGGACCAGGCGACGCTCGAGAACGCCAAGCGCGACCTGGAGCGCTACATCGCGCTGGCCGCCACCAATTCGGTGACCAAGCAGCAGGCCGACACCCAGCGCGCCGTGGTGGCGCAGACGCAAGCCATGCTGCAGGCCGACCAGGCGGCGATCGAGGCGGCCCAGATCACGCTCGGCTACACCACCATCACCGCGCCGATCGACGGCAGGACCGGCATCCGCATGATCGACGAGGGCAATCTCCTGCAGGCAGCCTCCTCCACCGGCATCGTCACCATCTCGCAGATCAAGCCGATCGCCGTGCTGTTCTCGGTGCCGCAGCAGCAATTGATGCGCATCAACAAGGCCAGCGCCGGCGGCGCCCTCGCCGTCGACGTCATGGACGATGCCGGCAAGGTCGTCGACACCGGCAAGCTCCTGGTGATCGACAACCAGGTCGACCAGACCACCGGCACGGTGCGGCTCAAGGCGACCTTTCCCAACGAGGGCCTGGTGCTCTGGCCCGGCGCCTTCGTCAATGCGCGCCTGCTGGTCGACACGCTGAAGGGCGCGATCGTGGTGCCGACCGCCGCGGTGCAGCGCGGCCCCGACGGCGCCTTCGTCTATCTCCTGAAGCCCGACCAGACCGTGGCCCAGCATGCGATCACCGTCGGCCAGCAGGACGACCGCCAGGCGGTGGTCACGGCGGGCCTCGCCGTCGGCGACCGGGTGGTGACCACCGGCTTCGCCCGGCTGACCGACGGGGCGAAGGTGCAGGTTTCCCCGGCCGATCAGGGCACGGCCTCGGCCGACACCCCGGCGGTCGATCCGCCGGCCGAGCCGGCGAAGCCCCGGCAGCATCGCCGGCCGCGCGACCAGTCGGCCCAATGA
PROTEIN sequence
Length: 380
TVAQHAITVGQQGPIAVLSAPAAAADVPVYVEGVGTAQAFNTVTVRPQVDGRLVEVAFQEGQDVRKGDVLARIDDRTYRAELDQAVAKQAQDQATLENAKRDLERYIALAATNSVTKQQADTQRAVVAQTQAMLQADQAAIEAAQITLGYTTITAPIDGRTGIRMIDEGNLLQAASSTGIVTISQIKPIAVLFSVPQQQLMRINKASAGGALAVDVMDDAGKVVDTGKLLVIDNQVDQTTGTVRLKATFPNEGLVLWPGAFVNARLLVDTLKGAIVVPTAAVQRGPDGAFVYLLKPDQTVAQHAITVGQQDDRQAVVTAGLAVGDRVVTTGFARLTDGAKVQVSPADQGTASADTPAVDPPAEPAKPRQHRRPRDQSAQ*