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berkeley_reactor_200306_biofilm_scaffold_34479_31

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 34019..35149

Top 3 Functional Annotations

Value Algorithm Source
ABC-type spermidine/putrescine transport system, ATPase component n=1 Tax=Herbaspirillum sp. YR522 RepID=J2V9X6_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 61.4
  • Coverage: 360.0
  • Bit_score: 435
  • Evalue 4.40e-119
ABC-type spermidine/putrescine transport system, ATPase component {ECO:0000313|EMBL:EJN02702.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.4
  • Coverage: 360.0
  • Bit_score: 435
  • Evalue 6.20e-119
ABC transporter similarity KEGG
DB: KEGG
  • Identity: 61.2
  • Coverage: 356.0
  • Bit_score: 429
  • Evalue 5.30e-118

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Taxonomy

Herbaspirillum sp. YR522 → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1131
ATGAACGCGCTCGCCGCGCAGGACGTCCTGAGGCCTGGTACGCCGGTCGATGCGGAGCACCGGGCGGCGGCCGTCGCGGTTGCGCCCAAGCTCATGGTCCGGGGCCTCGCCAAGCGCTACGGCACGGCGCAGGCGCTGCAGCCGACGGATCTCGACGTCGCCGCCGGCGAGCTCCTGACCGTGCTCGGCCCTTCCGGGTCCGGCAAGACGACGCTGCTGCAGCTCGTCTGCGGCCTCGCCGAGCCGACCGGGGGCCGGCTGTTCATCGACGGTGTCGACCAGACGGCGACGCCGGTGCACCGGCGCGGCATCGGCGTCGTCTTCCAGACCTATGCGCTGTTCCCGCATCTGACGGTCGAGGAGAACGTCTCCTTCCCGCTGGAAATGCGCAAGCTGCCCGCGGCCGAACTCGCGGCCAAGGTGGCGCGCGCGCTGGAGATGGTCGGCCTCGGCGCGCTCGGGGGCCGCTTTCCTCGGGAATTGTCGGGCGGCCAGCAGCAGCGCGTCGCGCTCGCCCGCTGCCTGGTCTACGAGCCGGCGCTGATCCTGATGGACGAGCCGCTAGGGGCGCTCGACCGCAAGCTGCGCGAGACGATGCAGATCGAGATCAAGCGGCTGCATCGCGACACCGGCGCGACCATCATCTTCGTCACCCATGACCAGGACGAGGCGCTGGCCCTCTCGGACCGGATCTGCCTGATGAACAATGCCCGCATCGAGCAGGTCGGCACGCCGCGGGAGATCTATGAACGGCCCGGCAGCCTGTTCGTGGCCGGGTTCATCGGCCTCTCCAACGTGCTGCACGGCCGGATCCAGCGCCCGGGCCTGCTGGCGACGGCCGACGGCGCCTTCCCGCTGCCCGAGCGCCTGCGCCGTTCCCTCCCGGCCGATCGCCAGGGCGCCCTCGTCATCCGGCCGGAGGACGTGGAGCTCGTGCCCGGCGGCGACGGCGCGATCACCGGCCATGTCGTCGAGACCGTCTACGGCGGCGCCGAGACCCGGCTCATGGTCGCGCTGCCGTCCGGGACGGTCATGACCGTGCGCCGCTCCTCACGCCAGGGCGCCTTGCAGGTCGGCGATCGCGTGTCCCTGCGATGGGATGCCGACCGGGCGCATGTCCTGCCTGCCTAG
PROTEIN sequence
Length: 377
MNALAAQDVLRPGTPVDAEHRAAAVAVAPKLMVRGLAKRYGTAQALQPTDLDVAAGELLTVLGPSGSGKTTLLQLVCGLAEPTGGRLFIDGVDQTATPVHRRGIGVVFQTYALFPHLTVEENVSFPLEMRKLPAAELAAKVARALEMVGLGALGGRFPRELSGGQQQRVALARCLVYEPALILMDEPLGALDRKLRETMQIEIKRLHRDTGATIIFVTHDQDEALALSDRICLMNNARIEQVGTPREIYERPGSLFVAGFIGLSNVLHGRIQRPGLLATADGAFPLPERLRRSLPADRQGALVIRPEDVELVPGGDGAITGHVVETVYGGAETRLMVALPSGTVMTVRRSSRQGALQVGDRVSLRWDADRAHVLPA*