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berkeley_reactor_200306_biofilm_scaffold_34479_32

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 35197..36270

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CRQ5_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 63.0
  • Coverage: 357.0
  • Bit_score: 473
  • Evalue 1.80e-130
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC47042.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.9
  • Coverage: 355.0
  • Bit_score: 490
  • Evalue 2.00e-135
putative Spermidine/putrescine ABC transpoter (substrate binding protein) similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 359.0
  • Bit_score: 372
  • Evalue 9.50e-101

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Taxonomy

Bradyrhizobium sp. LTSP849 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1074
ATGAAGAAAACTGAGGGGATCACACGGCGTCGCTTCCTCAACGGAGCAGGCCTCGCGGCGGCCGGGCTGTCGATGCCGATGGTCTGGACCGGCACGCGCGCCTTCGCCGCCGATCAGATCACCGTCGCCGATGTCGGCGGCGCGCCCGGCGCGGCGATCAAGCAGGCCTTCTACGACCCGTTCGAGAAGGAGACCGGCATCCACGTGGTCGGGGTCGCCCATGAGGCCGACCCGCAGAGCCAGTTCAAGCTCCTGGTCGACACCGGCAGCTTCATCTGGGACGCCTGCATGGTGACCCCGTCCCACGTCGCCTATCTCAGCAAGCCGAAGGACTATCTGGAGCCGCTCGGCATCTCTGCCGAGGACGGCAAGGACTTCGTGCCCGGCACGCTGACGCCGGTCTGGCTTGGCTTTTCCGTCTACGGCATGATCATGGCCTATCGGACCGACAAGTTCGGCGAGAACGGCCCGAAGACCTGGGCCGATTTCTTCGATGTCGCGAAATTCCCGGGACGGCGCGGCCTCTACAAGGGCTACCAGGGCGCCATCGAGATGGCCCTGCTCGCCGACGGGGTCGCGCCCGACAAGCTCTACCCGCTCGATCTCGACCGCGCCTTCAAGATGCTCGACAAGATCAAGTCGAGCGTCGCGGTGTGGTGGACCAGCGGCGCCCAGAACACCCAGATCCTGCAGAGCGGCGAGGTCGACCTTTCCGACACCTGGAGCGCCCGCGCCTTCGCGGCGGCCGATGGCGGCGCCCCGGTCAAGATCGTCTGGGACGGGCTCTATTCGACCGACGGCTGGTCGATCCCCAAGGGCACGCCGCGCGCCGACCTCGCCCGGAAATTCATCCGCTTCTGCATGAAGCCGGAGCATCAGGGCGCCTATTGCAGCATCGTCGCCAACGGGCCGACCAACCTCAAGGCCTATGACTTCATCAAGCCGGAGCGGGCGAGGTTCCTGCCGACCTATCCGGAGAACCTGAAGCACCTCGCCACCTTCGGCGAAGTCTATTGGGCCGAGAACAACGGCCCGATCGAGGAGCGCTTCCAGACCTGGCTGCTCGGCGGCTGA
PROTEIN sequence
Length: 358
MKKTEGITRRRFLNGAGLAAAGLSMPMVWTGTRAFAADQITVADVGGAPGAAIKQAFYDPFEKETGIHVVGVAHEADPQSQFKLLVDTGSFIWDACMVTPSHVAYLSKPKDYLEPLGISAEDGKDFVPGTLTPVWLGFSVYGMIMAYRTDKFGENGPKTWADFFDVAKFPGRRGLYKGYQGAIEMALLADGVAPDKLYPLDLDRAFKMLDKIKSSVAVWWTSGAQNTQILQSGEVDLSDTWSARAFAAADGGAPVKIVWDGLYSTDGWSIPKGTPRADLARKFIRFCMKPEHQGAYCSIVANGPTNLKAYDFIKPERARFLPTYPENLKHLATFGEVYWAENNGPIEERFQTWLLGG*