ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_58265_42

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 38508..39860

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003778763 similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 451.0
  • Bit_score: 474
  • Evalue 6.10e-131
virulence factor family protein similarity KEGG
DB: KEGG
  • Identity: 45.6
  • Coverage: 445.0
  • Bit_score: 374
  • Evalue 3.20e-101
Virulence factor family protein {ECO:0000313|EMBL:ADJ25312.1}; Flags: Precursor;; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.6
  • Coverage: 445.0
  • Bit_score: 374
  • Evalue 1.60e-100

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hyphomicrobium denitrificans → Hyphomicrobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1353
ATGCGCCTTGCCTGTCTATCCCTCTCGATCCTGCTGGCCTTCGCCGCGCCGGCCTTCGCCGCGCCGCGCGAGATCCAGGTGGACGAGGAGTCGCTCGGCAAGGTCACGGTGCTCGCGCCCGCGGAAGAGCCGCAGATCTGGGTGGCCCTGCTCTCCGACAAGGATGGGATCACGGCGGAGTATAGGGCCAAGGCGGAGAAGCTGGTCGCCGCCGGCGCCGCCGTGGCGCTGATCGACACGCCCAAGCTGATCGATGGGCTCGCCAAGGGCGACGAGGTCGACTGCCACTATGCCTTCGGCGACATCGAGGACACCGCCCGGGCCAGCCAGCGCGCCCTCGGCATGAAGGTCTGGCGCTGGCCGACCCTGCTCGGCCTCGGCGAGATGGGCGGCACGCTGACCTATCTCGCCGTCGCCCAGGCGCCGGAGAACACCGCCGCCGGCGGCGTCAGCCTCGGCTTCAGCACGCAATTCGCCTCCAAGCTGGTGATCTGCGACGGCGCCGTCGGCACCAAGGTCCATGACGGCCTGTGGAACTACGCGCCGATGGTCGACCTGCCCGCCCGCTGGACCTATGTCGCCGCCGACAAGCCCGACGCCGCCGTCCAGGCCTTCCTCGACGCGAGCAAGAAGAACACGGCGGCGCTCGCCGTGCCCGGCGACGACGAGGCTCGCTTCGACGCCGCGCTCAAGGCGGCGCTCGAGATCGGCGCTCCGCCCCAGGAGGAGCTCGGCGACCTGCCGCTGGAGGAGCTGCCGACCGACGGCCCGCCGATCGGCCTCGCCGTGCTGCTCTCGGGCGACGGCGGCTGGCGCGACATCGACAAGTCGATCGCCGAGATCCTGCAGCAGGAGGGCGTCGCCGTCGTCGGCGTCGATTCCCTGCGCTATTTCTGGAGCACCAAGGAGCCCGACGTCGTCGCCTCCGACATCGGCCGCATCATCGCCCACTACACCAAGATCTGGGGGGCCAAGCGCGTGGCGGTCATGGGCTATTCGCTCGGCGCCGACGTCATCCCCTTCGCCTGGCAGAAGTTCTCGCCCGCTCTCAAGAAGCAGATCAACCTCGTCGCCCTGCTCGGCCTGGAGCCGACCGCCGACTTCGAGATCTCGGTCTCCGGCTGGCTCGGCGTCGCCTCCTCCTCCGACATCGACCTCAAGCCCTACCTGCCCTCGCTGCCGATGGAGAAGACGATGTGCTTCTACGGCGAGGACGAGGTCGCGGACAACGAGACCGCCTGCGTCTTCCCCGAGATGGCCAAGGCCACCATCGTCAAGCGCCCGGGCGGCCACCATTTCGACGGCAATTACGAGCCGGTGGCCCGCATGATCCTGGAGCGGCTGAAGAAGTAG
PROTEIN sequence
Length: 451
MRLACLSLSILLAFAAPAFAAPREIQVDEESLGKVTVLAPAEEPQIWVALLSDKDGITAEYRAKAEKLVAAGAAVALIDTPKLIDGLAKGDEVDCHYAFGDIEDTARASQRALGMKVWRWPTLLGLGEMGGTLTYLAVAQAPENTAAGGVSLGFSTQFASKLVICDGAVGTKVHDGLWNYAPMVDLPARWTYVAADKPDAAVQAFLDASKKNTAALAVPGDDEARFDAALKAALEIGAPPQEELGDLPLEELPTDGPPIGLAVLLSGDGGWRDIDKSIAEILQQEGVAVVGVDSLRYFWSTKEPDVVASDIGRIIAHYTKIWGAKRVAVMGYSLGADVIPFAWQKFSPALKKQINLVALLGLEPTADFEISVSGWLGVASSSDIDLKPYLPSLPMEKTMCFYGEDEVADNETACVFPEMAKATIVKRPGGHHFDGNYEPVARMILERLKK*