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berkeley_reactor_200306_biofilm_scaffold_58265

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_58265_1
unknown

Not on your lists

comp(1..333)
DNA (333bp) protein (111aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_58265_2
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

416..1462
DNA (1047bp) protein (349aa)
AraC family transcriptional regulator n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GVK6_9RHIZ
AraC family transcriptional regulator {ECO:0000313|EMBL:ESZ02552.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
Arabinose operon regulatory protein
berkeley_reactor_200306_biofilm_scaffold_58265_3
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1447..2076)
DNA (630bp) protein (210aa)
UPI0003CF7A96 related cluster n=2 Tax=unknown RepID=UPI0003CF7A96
Glutathione S-transferase {ECO:0000313|EMBL:ESY28754.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
glutathione S-transferase
berkeley_reactor_200306_biofilm_scaffold_58265_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2163..3164)
DNA (1002bp) protein (334aa)
Zinc-binding alcohol dehydrogenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQ68_9RHIZ
Zinc-binding alcohol dehydrogenase {ECO:0000313|EMBL:EHK57137.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
NAD(P)H quinone oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_58265_5
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3381..3575
DNA (195bp) protein (65aa)
Uncharacterized small protein containing a coiled-coil domain n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YET5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CDX34477.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_58265_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3889..4410
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QFA9_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE99543.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
berkeley_reactor_200306_biofilm_scaffold_58265_7
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4451..5026)
DNA (576bp) protein (192aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YIN4_MOBAS
3-methyladenine DNA glycosylase
berkeley_reactor_200306_biofilm_scaffold_58265_8
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5023..5853)
DNA (831bp) protein (277aa)
Aldo/keto reductase family oxidoreductase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IDA3_AZOC5
aldo/keto reductase
Aldo/keto reductase family oxidoreductase {ECO:0000313|EMBL:BAF88898.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_58265_9
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5999..7591
DNA (1593bp) protein (531aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00037DDFD8
Glucan biosynthesis protein D {ECO:0000313|EMBL:KHK49201.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
mdoD; glucan biosynthesis protein D
berkeley_reactor_200306_biofilm_scaffold_58265_10
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7705..8214
DNA (510bp) protein (170aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7F8_STAND
berkeley_reactor_200306_biofilm_scaffold_58265_11
bacterium YEK0313, Bacteria

Not on your lists

8211..9290
DNA (1080bp) protein (360aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003770F06
berkeley_reactor_200306_biofilm_scaffold_58265_12
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9426..9662
DNA (237bp) protein (79aa)
30S ribosomal protein S21 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JTA4_HYPDA
30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
berkeley_reactor_200306_biofilm_scaffold_58265_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9857..10738
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F99F24
Uncharacterized protein {ECO:0000313|EMBL:KFC66516.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TPR repeat-containing protein
berkeley_reactor_200306_biofilm_scaffold_58265_14
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10947..11963
DNA (1017bp) protein (339aa)
cobalamin biosynthesis protein CobW n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DCC201
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ACK51932.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_58265_15
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12144..13151
DNA (1008bp) protein (336aa)
WD-40 repeat protein n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7L2H0_METC4
hypothetical protein
WD-40 repeat protein {ECO:0000313|EMBL:ACK83455.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
berkeley_reactor_200306_biofilm_scaffold_58265_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13156..13425
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HY39_AZOC5
Uncharacterized protein {ECO:0000313|EMBL:KFC74144.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_58265_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13432..13818)
DNA (387bp) protein (129aa)
Endoribonuclease L-PSP n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A610_STAND
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ADH90125.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_58265_18
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13847..14944
DNA (1098bp) protein (366aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTJ1_9RHIZ
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG70479.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
NMT1/THI5 like domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_58265_19
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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15329..16117
DNA (789bp) protein (263aa)
ABC transporter nucleotide binding/ATPase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWC3_POLGS
ABC transporter permease/ATPase
ABC transporter nucleotide binding/ATPase protein {ECO:0000313|EMBL:ADZ69222.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_58265_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16114..16932
DNA (819bp) protein (273aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VG75_RHOPX
binding-protein-dependent transporter inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU41799.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
berkeley_reactor_200306_biofilm_scaffold_58265_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16932..18248
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E8FB92
Cytosine deaminase-like metal-dependent hydrolase {ECO:0000313|EMBL:KFC63675.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cytosine deaminase-like protein
berkeley_reactor_200306_biofilm_scaffold_58265_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18245..19657
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000309DF28
FAD linked oxidase domain protein {ECO:0000313|EMBL:KFC63674.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD linked oxidase
berkeley_reactor_200306_biofilm_scaffold_58265_23
Halomonas huangheensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19662..19967
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AE9453
Uncharacterized protein {ECO:0000313|EMBL:ERL50499.1}; TaxID=1178482 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas huangheensis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_58265_24
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19967..20548
DNA (582bp) protein (194aa)
NAD(P)H dehydrogenase (Quinone)
Quinone dependent NADH dehydrogenase id=2448321 bin=GWF1_Rhodobacteraceae_65_7 species=Dinoroseobacter shibae genus=Dinoroseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
berkeley_reactor_200306_biofilm_scaffold_58265_25
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20636..21127
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003800280
Transcriptional regulator, TrmB {ECO:0000313|EMBL:EMS40653.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
MarR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_58265_26
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21316..22215)
DNA (900bp) protein (300aa)
garR1; 2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase GarR n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X2K5_RHIFR
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:KJB94799.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
berkeley_reactor_200306_biofilm_scaffold_58265_27
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22285..23253)
DNA (969bp) protein (323aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=2 Tax=Methylobacterium RepID=B0U9A7_METS4
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ACA15378.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_58265_28
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23365..23568)
DNA (204bp) protein (68aa)
mRNA interferase YafQ n=1 Tax=Kushneria aurantia RepID=UPI00037DD5A7
mRNA interferase YafQ {ECO:0000313|EMBL:ESY69972.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
putative addiction module toxin, RelE/StbE family
berkeley_reactor_200306_biofilm_scaffold_58265_29
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23637..23894)
DNA (258bp) protein (86aa)
UPI0003CF64AD related cluster n=1 Tax=unknown RepID=UPI0003CF64AD
XRE family transcriptional regulator {ECO:0000313|EMBL:ESY73199.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
RelB/DinJ family addiction module antitoxin
berkeley_reactor_200306_biofilm_scaffold_58265_30
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23987..24970)
DNA (984bp) protein (328aa)
NAD-dependent epimerase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F0F9B9
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACA20289.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Displaying items 1-30 of 51 in total

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