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berkeley_reactor_200306_biofilm_scaffold_73177_2

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(1538..3142)

Top 3 Functional Annotations

Value Algorithm Source
Sigma 54 interacting domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWQ9_METTR similarity UNIREF
DB: UNIREF100
  • Identity: 72.7
  • Coverage: 523.0
  • Bit_score: 766
  • Evalue 1.60e-218
rtcR; sigma 54-dependent transcriptional regulator of rtcBA expression similarity KEGG
DB: KEGG
  • Identity: 68.0
  • Coverage: 528.0
  • Bit_score: 715
  • Evalue 8.90e-204
Sigma 54-dependent transcriptional regulator of rtcBA expression {ECO:0000313|EMBL:CBJ44440.1}; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.0
  • Coverage: 528.0
  • Bit_score: 715
  • Evalue 4.40e-203

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Taxonomy

Ralstonia solanacearum → Ralstonia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1605
ATGGCGCGGCGGCGGGTGGTGTTCGGCTTCCTCGGCACGACCATGGATGCGGGCAAGCTGGAGGCGCGCTGGGAGCGCTGGCGCCCCACCGTGGCGCTCTGCCAGCACGAGGACTTCGTCGTCGATCGCCTGGAGCTGCTGCACGACACCCGGTCGCAATCCCTGGCCCGTCGGGTCTGCGCCGACATCGCCCAGGTCTCGCCGGAGACGCAGGTGCGCTCCACCGTCATGAATCTCAGGGATCCCTGGGATTTCGAGGAGGTCTACGGCGCCCTGCACGATTTCGCCCGGGCCTATCCCTTCGACCGGGACGGGGAGGACTATGTCGTCAACATCACCACGGGCACCCATGTCGCGCAGATCTGCTGGTTCCTGCTGATCGAGGCGCGCTACATCCCGGCGCAGATCCTGCAGCTCACCCCGCCCAGGGGCGGGCAGGAGGGCGGCGCCGGCGGCTACGGCCTGATCGACATCGACCTGTCGCGCTACGACCGCATCGCCACGCGCTTCCGCGTCGAGGCCGTCGAGGCGACCTCCTTCCTGAAGTCCGGCATCGCCACGCGCAGCGAAGCCTTCAACCGCATGATCGACCGCATCGAGCAGGTGGCCGTCCGCTCGCGCGCGCCGCTGCTGCTGTGCGGGCCGACCGGCGCCGGCAAGTCGCAGCTGGCGCGGCGGATCTACGATCTGAAGCGCAGCCGCCACCAGGTCGACGGCGCCTTCGTCGAGGTGAATTGCGCCACCCTGCGCGGCGACGGCGCCATGTCCGCGCTGTTCGGCCATGTCAAAGGCGCCTTCACCGGCGCCCTGCAGGAGCGGGCCGGCCTGCTGCGCTCGGCCGACCGCGGCATCCTGTTCCTCGACGAGATCGGCGAGCTCGGCCCGGACGAGCAGGCAATGATCCTGCGCGCCATCGAGGACAAGCGCTTTCCCCCCGTCGGCGCTGACCGGGAGGTGGCGAGCGACTTCCAGCTCATCGCCGGCACCAACCGCGACCTCGCCGAGGACGTGGCGGCCGGCCGGTTCCGCGAGGATCTGCTGGCGCGGCTCAACCTGTGGACCTTCGACCTGCCCGGCCTCAAGGAACGACGCGAGGACATCGAGCCGAATATCGAGTTCGAGCTGCGGCGCTACGCCAAGGCCGAGGGCGTGCAGGCGACCTTCAACCGCGAGGCGCGCGAGCGCTACCTCGCCTTCGCCATGTCGCCGGAAGCGGAATGGCGCGCCAATTTCCGCGACCTCGGGGCGTCGATCACCCGCCTGGCGACGCTGGCGCCGTCGGGCCGGATCACCCAGGCCGTGGTGGAGGAGGAGATCGAGCGCCTGCGCCGGCTCTGGGCGCGGCCTTCCACGGGCGGCGGCGAAGATGGTCTCGCCGGGCTGCTCGGCCCGGGGGCGGCCGAGCTCGACCTGTTCGATCGCGTCCAGCTTGCCGAAGTGGTGCGGGTCTGCCGGCGCCATGCCTCGCTCAGCGCCGCCGGCCGGGCTCTGTTCGCCGCCTCGCGGGCCCGCAAGGGCAGCGCCAACGATGCGGACCGGCTGCGCAAGTATCTCGCACGGTTCGGCCTGGAATGGCGGCAGGTCGGACCGACGACGCCCGGCTGA
PROTEIN sequence
Length: 535
MARRRVVFGFLGTTMDAGKLEARWERWRPTVALCQHEDFVVDRLELLHDTRSQSLARRVCADIAQVSPETQVRSTVMNLRDPWDFEEVYGALHDFARAYPFDRDGEDYVVNITTGTHVAQICWFLLIEARYIPAQILQLTPPRGGQEGGAGGYGLIDIDLSRYDRIATRFRVEAVEATSFLKSGIATRSEAFNRMIDRIEQVAVRSRAPLLLCGPTGAGKSQLARRIYDLKRSRHQVDGAFVEVNCATLRGDGAMSALFGHVKGAFTGALQERAGLLRSADRGILFLDEIGELGPDEQAMILRAIEDKRFPPVGADREVASDFQLIAGTNRDLAEDVAAGRFREDLLARLNLWTFDLPGLKERREDIEPNIEFELRRYAKAEGVQATFNREARERYLAFAMSPEAEWRANFRDLGASITRLATLAPSGRITQAVVEEEIERLRRLWARPSTGGGEDGLAGLLGPGAAELDLFDRVQLAEVVRVCRRHASLSAAGRALFAASRARKGSANDADRLRKYLARFGLEWRQVGPTTPG*