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berkeley_reactor_200306_biofilm_scaffold_73177

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Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_73177_1
bacterium YEK0313, Bacteria

Not on your lists

comp(1..1392)
DNA (1392bp) protein (464aa)
Flagellar hook-associated protein FliD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RER6_PELHB
Flagellin {ECO:0000313|EMBL:CEJ13854.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
flagellar hook-associated protein FliD
berkeley_reactor_200306_biofilm_scaffold_73177_2
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1538..3142)
DNA (1605bp) protein (535aa)
Sigma 54 interacting domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWQ9_METTR
rtcR; sigma 54-dependent transcriptional regulator of rtcBA expression
Sigma 54-dependent transcriptional regulator of rtcBA expression {ECO:0000313|EMBL:CBJ44440.1}; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;"
berkeley_reactor_200306_biofilm_scaffold_73177_3
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3368..4927
DNA (1560bp) protein (520aa)
TROVE domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWR0_METTR
Ribonucleoprotein {ECO:0000313|EMBL:EHH12548.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
TROVE domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_73177_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5510..6070
DNA (561bp) protein (187aa)
Probable RNA 2'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00299}; EC=2.7.1.- {ECO:0000256|HAMAP-Rule:MF_00299};; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
Probable RNA 2'-phosphotransferase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H439_RHIRD
kptA; RNA 2'-phosphotransferase
berkeley_reactor_200306_biofilm_scaffold_73177_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6076..7326
DNA (1251bp) protein (417aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
RNA-splicing ligase RtcB n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWR1_METTR
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_73177_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7323..8438
DNA (1116bp) protein (372aa)
RNA 3'-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; Short=RNA cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; Short=RNA-3'-phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; EC=6.5.1.4 {ECO:0000256|HAMAP-Rule:MF_00200};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
RNA 3'-phosphate cyclase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWR2_METTR
berkeley_reactor_200306_biofilm_scaffold_73177_7
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8548..9909
DNA (1362bp) protein (454aa)
UPI0003CE0A00 related cluster n=1 Tax=unknown RepID=UPI0003CE0A00
Uncharacterized protein {ECO:0000313|EMBL:ESW70595.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_73177_8
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10021..10860
DNA (840bp) protein (280aa)
YecA family protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDD3_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
berkeley_reactor_200306_biofilm_scaffold_73177_9
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10906..12432)
DNA (1527bp) protein (509aa)
UPI0003CFEB1D related cluster n=1 Tax=unknown RepID=UPI0003CFEB1D
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ESZ28596.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_73177_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12429..13220)
DNA (792bp) protein (264aa)
Creatininase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T7M5_MESCW
creatininase
Creatininase {ECO:0000313|EMBL:ADV11748.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
berkeley_reactor_200306_biofilm_scaffold_73177_11
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13217..14188)
DNA (972bp) protein (324aa)
UPI0003D05D30 related cluster n=1 Tax=unknown RepID=UPI0003D05D30
ABC transporter permease {ECO:0000313|EMBL:ESZ28594.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_73177_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14493..15512)
DNA (1020bp) protein (340aa)
inositol 2-dehydrogenase (EC:1.1.1.18)
Inositol 2-dehydrogenase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T7M7_MESCW
Uncharacterized protein {ECO:0000313|EMBL:KGM34219.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
berkeley_reactor_200306_biofilm_scaffold_73177_13
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15514..18051)
DNA (2538bp) protein (846aa)
UPI0003D02B87 related cluster n=1 Tax=unknown RepID=UPI0003D02B87
ABC transporter permease {ECO:0000313|EMBL:ESZ28593.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_73177_14
unknown

Not on your lists

comp(18104..18193)
DNA (90bp) protein (30aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_73177_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18333..19361)
DNA (1029bp) protein (343aa)
UPI0003CFE016 related cluster n=1 Tax=unknown RepID=UPI0003CFE016
LacI family transcriptional regulator {ECO:0000313|EMBL:KGM32019.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
periplasmic binding protein/LacI transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_73177_16
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19434..20375)
DNA (942bp) protein (314aa)
UPI0003D02CD1 related cluster n=1 Tax=unknown RepID=UPI0003D02CD1
Threonine dehydratase {ECO:0000313|EMBL:KGM32018.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
pyridoxal-5'-phosphate-dependent protein subunit beta
berkeley_reactor_200306_biofilm_scaffold_73177_17
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20372..21442)
DNA (1071bp) protein (357aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T7N1_MESCW
Succinylglutamate desuccinylase {ECO:0000313|EMBL:KGM32020.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
succinylglutamate desuccinylase/aspartoacylase
berkeley_reactor_200306_biofilm_scaffold_73177_18
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21563..22321
DNA (759bp) protein (253aa)
Regulatory protein IclR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T7N2_MESCW
Uncharacterized protein {ECO:0000313|EMBL:KGM32017.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
IclR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_73177_19
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22350..22736
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P120_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI74349.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
berkeley_reactor_200306_biofilm_scaffold_73177_20
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23016..24413)
DNA (1398bp) protein (466aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Rhizobium sp. AP16 RepID=J2CQL1_9RHIZ
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:EJK79289.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
gatA1; amidase
berkeley_reactor_200306_biofilm_scaffold_73177_21
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24425..25171)
DNA (747bp) protein (249aa)
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:KJS11726.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KJS11726.1};; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
3-ketoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003808DEE
berkeley_reactor_200306_biofilm_scaffold_73177_22
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25201..26694)
DNA (1494bp) protein (498aa)
Phenylacetaldehyde dehydrogenase {ECO:0000313|EMBL:CCV08930.1}; EC=1.2.1.39 {ECO:0000313|EMBL:CCV08930.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Phenylacetaldehyde dehydrogenase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EYA0_9RHIZ
aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_73177_23
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26711..27937)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E4B0DF
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EJE53187.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
Beta-lactamase
berkeley_reactor_200306_biofilm_scaffold_73177_24
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27949..29589)
DNA (1641bp) protein (547aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DF80A5
Glutathione ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB12708.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_73177_25
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29586..30437)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003081263
peptide ABC transporter permease
Peptide ABC transporter permease protein {ECO:0000313|EMBL:BAF88694.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_73177_26
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30437..31378)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EF2661
peptide/opine/nickel uptake ABC transporter permease
Peptide/opine/nickel uptake family ABC transporter permease {ECO:0000313|EMBL:BAF88695.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_73177_27
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31452..33041)
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003645742
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG69982.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
peptide ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_73177_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33228..34622
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036A0825
Amidase {ECO:0000313|EMBL:GAN78053.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
amidase
berkeley_reactor_200306_biofilm_scaffold_73177_29
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34832..35722)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F27AED
GntR family transcriptional regulator
GntR family Transcriptional regulator {ECO:0000313|EMBL:EFV85338.1}; GntR family transcriptional regulator {ECO:0000313|EMBL:AIR51255.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
berkeley_reactor_200306_biofilm_scaffold_73177_30
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35761..36597)
DNA (837bp) protein (279aa)
sugar ABC transporter permease n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI00026276B1
Sugar ABC transporter permease {ECO:0000313|EMBL:KDP73134.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
binding-protein-dependent transport system inner membrane protein
Displaying items 1-30 of 109 in total

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