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berkeley_reactor_200306_biofilm_scaffold_87643_4

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 1886..2812

Top 3 Functional Annotations

Value Algorithm Source
Choline ABC transporter, periplasmic binding protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HLP3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 64.6
  • Coverage: 311.0
  • Bit_score: 428
  • Evalue 4.40e-117
Choline ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:EJM99440.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.6
  • Coverage: 311.0
  • Bit_score: 428
  • Evalue 6.20e-117
ABC-type proline/glycine betaine transport systems, periplasmic component similarity KEGG
DB: KEGG
  • Identity: 56.0
  • Coverage: 309.0
  • Bit_score: 357
  • Evalue 3.60e-96

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Taxonomy

Phyllobacterium sp. YR531 → Phyllobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 927
ATGAAGAGACTGATCGCCGCGGCCGTTGCCGCAACCCTGAGCTCGTTCCACGCCAGCGCCGAGGATGCATCCTGCGCCCGCGTCCGCAGCGCCGACATGGGCTGGACCGACATCGTCCTGACCACGACGACGGCCGGCCTCGTGCTGAAGGCGATGGGCTATGAGATGAGCAACACGCTGCTCGGCCTCAACGTCGCCTATGAGAGCCTGAAGACCGGCCAGATCGACATTTTCCTCGGCAACTGGCGGCCGGCCCAGGACATCGAGTTCAAGGCCTATTTCGACAAGAACTGGGTCGATGTCGTCACCACCAACCTGGAAGGCGCCAAGTATACGCTGGCCGTTCCGACCTATGTCGCGGATGCCGGCGTCCGCAGCTTCGACGACCTCGCCAGGTTTCCGGATCGGTTCTACAAGAAGATCTACGGCATCGAGCCCGGCACCAACCAGCCGCTTCTCGACATGGTGGCGGCCGGTCGCCACGGCCTGAAGGACTGGGAGATCGTCGAGTCCAGCGAGCAGGGCATGCTGGCCCAGGTTCGCCGGTCGATCGAACGCAAGGAATGGGTGGTGTTCCTCGGCTGGCAGCCGCACCCGATGAACCTCGACTACGACATCACCTACCTCGCCGGCGGCGACCAGGAGTTCGGGCCGAACTTCGGCGGCTCGACGGTCCGGACACTCTCGCGCCCGGGCTACGCCGCAGCCTGCCCGAACCTGGCGCGCTTCTTCCGCAACCTCACCTTCGACGTCGCCTATGAGAACCGCGGCATGAAGATGATCGTCGACGACGGCATGGAAGCGCCCGCCGCCGCGCTGGCGCTGCTCAAGGCGCACCCGGAGAAGCTCGAAGCCTGGCTCGACGGCGTCACGACGCACGACGGGCAGCCGGCGCTCCCTGCGGTCCGGGCGGCCCTGGCGCAATGA
PROTEIN sequence
Length: 309
MKRLIAAAVAATLSSFHASAEDASCARVRSADMGWTDIVLTTTTAGLVLKAMGYEMSNTLLGLNVAYESLKTGQIDIFLGNWRPAQDIEFKAYFDKNWVDVVTTNLEGAKYTLAVPTYVADAGVRSFDDLARFPDRFYKKIYGIEPGTNQPLLDMVAAGRHGLKDWEIVESSEQGMLAQVRRSIERKEWVVFLGWQPHPMNLDYDITYLAGGDQEFGPNFGGSTVRTLSRPGYAAACPNLARFFRNLTFDVAYENRGMKMIVDDGMEAPAAALALLKAHPEKLEAWLDGVTTHDGQPALPAVRAALAQ*