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berkeley_reactor_200306_biofilm_scaffold_87643

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Displaying items 1-30 of 174 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_87643_1
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..127
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RJV0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:GAN82114.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_87643_trna_2
unknown

Not on your lists

comp(373..459)
DNA (87bp)
transferRNA Ser
berkeley_reactor_200306_biofilm_scaffold_87643_2
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

620..940
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037CC66E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF86673.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_87643_3
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1120..1743)
DNA (624bp) protein (208aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VHH6_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJM99439.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
TetR family
berkeley_reactor_200306_biofilm_scaffold_87643_4
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1886..2812
DNA (927bp) protein (309aa)
Choline ABC transporter, periplasmic binding protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HLP3_9RHIZ
Choline ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:EJM99440.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ABC-type proline/glycine betaine transport systems, periplasmic component
berkeley_reactor_200306_biofilm_scaffold_87643_5
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2809..3873
DNA (1065bp) protein (355aa)
Zn-dependent alcohol dehydrogenase n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V1I6_9RHIZ
Zn-dependent alcohol dehydrogenase {ECO:0000313|EMBL:EJM99441.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
alcohol dehydrogenase GroES domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_87643_6
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4060..4650
DNA (591bp) protein (197aa)
Transcriptional regulator, TetR family protein n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SLG1_RHOPH
TetR family transcriptional regulator
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:CCG08826.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
berkeley_reactor_200306_biofilm_scaffold_87643_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4647..6107
DNA (1461bp) protein (487aa)
Putative multidrug efflux protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7E6_HYPSM
multidrug efflux protein
Putative multidrug efflux protein {ECO:0000313|EMBL:CCB67259.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
berkeley_reactor_200306_biofilm_scaffold_87643_8
bacterium YEK0313, Bacteria

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6160..7404
DNA (1245bp) protein (415aa)
Multidrug efflux system, subunit A (AcrB family) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z5X6_AZOL4
Multidrug resistance protein MdtA {ECO:0000313|EMBL:CEJ14666.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
mdtA2; multidrug efflux system, subunit A (AcrB family)
berkeley_reactor_200306_biofilm_scaffold_87643_9
bacterium YEK0313, Bacteria

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7414..10563
DNA (3150bp) protein (1050aa)
Acriflavin resistance protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214Y7_RHOPB
Multidrug resistance protein MdtC {ECO:0000313|EMBL:CEJ14667.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
acriflavin resistance protein
berkeley_reactor_200306_biofilm_scaffold_87643_10
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10699..11463
DNA (765bp) protein (255aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=2 Tax=Labrenzia RepID=U7GHR8_9RHOB
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:ERP97319.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
acyltransferase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_87643_11
unknown

Not on your lists

11654..12481
DNA (828bp) protein (276aa)
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_87643_12
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12669..12998
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUP4_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA03997.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
berkeley_reactor_200306_biofilm_scaffold_87643_13
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13014..13328)
DNA (315bp) protein (105aa)
Transcriptional regulator, XRE family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDK6_9RHIZ
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:CDN54373.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
berkeley_reactor_200306_biofilm_scaffold_87643_14
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13404..14093)
DNA (690bp) protein (230aa)
Asp/Glu/hydantoin racemase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M2V7_METRJ
Asp/Glu/hydantoin racemase
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:ACB23248.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
berkeley_reactor_200306_biofilm_scaffold_87643_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14102..14887)
DNA (786bp) protein (262aa)
Short chain dehydrogenase n=1 Tax=Nitratireductor indicus C115 RepID=K2PG18_9RHIZ
Short chain dehydrogenase {ECO:0000313|EMBL:EKF39972.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_87643_16
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14922..16223)
DNA (1302bp) protein (434aa)
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I469_9BRAD
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family {ECO:0000313|EMBL:EJN14696.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
monooxygenase
berkeley_reactor_200306_biofilm_scaffold_87643_17
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16220..17173)
DNA (954bp) protein (318aa)
Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:EEX12339.1}; EC=3.2.2.- {ECO:0000313|EMBL:EEX12339.1};; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
Inosine-uridine preferring nucleoside hydrolase n=1 Tax=Citreicella sp. SE45 RepID=D0DCM9_9RHOB
Inosine/uridine-preferring nucleoside hydrolase
berkeley_reactor_200306_biofilm_scaffold_87643_18
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17170..18144)
DNA (975bp) protein (325aa)
Probabe gentisate 1,2-dioxygenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I9Y3_AZOC5
gentisate 1,2-dioxygenase
Probabe gentisate 1,2-dioxygenase {ECO:0000313|EMBL:BAF88437.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_87643_19
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18169..19569)
DNA (1401bp) protein (467aa)
Putative amidase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TTU6_TISMK
amiD; Putative amidase
Putative amidase {ECO:0000313|EMBL:AFK56184.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
berkeley_reactor_200306_biofilm_scaffold_87643_20
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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19794..20804
DNA (1011bp) protein (337aa)
NMT1/THI5 like domain protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TTU7_TISMK
NMT1/THI5 like domain-containing protein
NMT1/THI5 like domain protein {ECO:0000313|EMBL:AFK56185.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
berkeley_reactor_200306_biofilm_scaffold_87643_21
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20831..21670
DNA (840bp) protein (280aa)
ABC transporter related protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TTE4_TISMK
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:AFK56032.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
berkeley_reactor_200306_biofilm_scaffold_87643_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21667..22440
DNA (774bp) protein (258aa)
ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X9B0_VARPD
ABC transporter, permease protein
ABC transporter, permease protein {ECO:0000313|EMBL:AGU49522.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
berkeley_reactor_200306_biofilm_scaffold_87643_23
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22425..23171
DNA (747bp) protein (249aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CMA7_9BURK
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EJN08699.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
ABC transporter, permease protein
berkeley_reactor_200306_biofilm_scaffold_87643_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23174..23959
DNA (786bp) protein (262aa)
Putative aldolase, class 2 n=1 Tax=Variovorax paradoxus B4 RepID=T1XB22_VARPD
putative aldolase, class 2
Putative aldolase, class 2 {ECO:0000313|EMBL:AGU49524.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
berkeley_reactor_200306_biofilm_scaffold_87643_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24005..24712
DNA (708bp) protein (236aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000373FE49
transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGU49526.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
berkeley_reactor_200306_biofilm_scaffold_87643_26
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24760..25236)
DNA (477bp) protein (159aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2CVD1_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJK81084.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
MarR family transcriptional regulatory protein
berkeley_reactor_200306_biofilm_scaffold_87643_27
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25328..25696
DNA (369bp) protein (123aa)
Putative enzyme involved in biosynthesis of extracellular polysaccharide n=1 Tax=Rhizobium sp. AP16 RepID=J2WEM9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAJ93755.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_87643_28
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(25742..26593)
DNA (852bp) protein (284aa)
Putative hydrolase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QVT5_9DELT
Putative hydrolase {ECO:0000313|EMBL:EPX60783.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
alpha/beta hydrolase
berkeley_reactor_200306_biofilm_scaffold_87643_29
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26763..27416
DNA (654bp) protein (218aa)
Signal transduction histidine kinase, LytS n=1 Tax=Citreicella sp. SE45 RepID=D0DCM6_9RHOB
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:EEX12244.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
hypothetical protein
Displaying items 1-30 of 174 in total

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