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berkeley_reactor_200306_biofilm_scaffold_87643_25

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 24005..24712

Top 3 Functional Annotations

Value Algorithm Source
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000373FE49 similarity UNIREF
DB: UNIREF100
  • Identity: 64.8
  • Coverage: 219.0
  • Bit_score: 270
  • Evalue 1.20e-69
transcriptional regulator, GntR family similarity KEGG
DB: KEGG
  • Identity: 65.9
  • Coverage: 217.0
  • Bit_score: 270
  • Evalue 4.40e-70
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGU49526.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.9
  • Coverage: 217.0
  • Bit_score: 270
  • Evalue 2.20e-69

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 708
ATGGCGACGGTTCTGCTCGACGAAGACGAGGGCGCGCGCACGCGGGCCGGCACCCTGTCCGAGGAGCTGCGCAACACGCTCGAAGGGCTGATCGTCAGCGGCGGCCTGCAGCCGGGCGAGCGCCTCGACGAGGCCGAGCTCGCGGCGCGCTTCAAGGTGTCGCGGACCCCGGTGCGCGAGGCGCTGAAGGCCCTGATCGCCACCGGCCTCCTGGAGGTGAAGGGCCGCCAGGGCGTCACCGTCGCGATCATCTCCATCCCGATCCTCCTGGAGATGTTCGAGATGATGGCGGCGCTGGAGGGCCTGTGCGCCAAGCTGGCGGCGCGGCGCGCCACCGTCGCCGAAAAGTCAGGCCTGCGCGACGTGCATGCCCGCCTGCTCGAGGCGCTGGCGGCGAGCGACCCGGAAGCCTTCTACGCCGTCAACCAGGAGTTCCACGACCTGCTCTACGAGGCGGCGCACACCCAGTTCCTGGCGAGCCAGACCCGGGCGCTGAGGAAGCGCGTCGCCGCCTATCGCCGCTACGTCACGCACCAGCCCGGCCGGATGGCGGCGACCATCGGCGAGCACCAGCGCATCCTCGACGCCATCGAGCGCGCCGACGCCCAGGCCGCCTTCCAGGCCGCCAGCGACCATGTCAACCTGCTCGGCGACAACATGGCCGACTTCATCGCCTCCCTGCCCGCGGCCCTGACCCAGGCCTCCTGA
PROTEIN sequence
Length: 236
MATVLLDEDEGARTRAGTLSEELRNTLEGLIVSGGLQPGERLDEAELAARFKVSRTPVREALKALIATGLLEVKGRQGVTVAIISIPILLEMFEMMAALEGLCAKLAARRATVAEKSGLRDVHARLLEALAASDPEAFYAVNQEFHDLLYEAAHTQFLASQTRALRKRVAAYRRYVTHQPGRMAATIGEHQRILDAIERADAQAAFQAASDHVNLLGDNMADFIASLPAALTQAS*