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berkeley_reactor_200306_biofilm_scaffold_95231_56

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(54602..57181)

Top 3 Functional Annotations

Value Algorithm Source
PBS lyase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVD0_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 30.0
  • Coverage: 447.0
  • Bit_score: 136
  • Evalue 7.50e-29
PBS lyase {ECO:0000313|EMBL:EIL91171.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 30.0
  • Coverage: 447.0
  • Bit_score: 136
  • Evalue 1.00e-28
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 31.9
  • Coverage: 339.0
  • Bit_score: 84
  • Evalue 1.20e-13

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2580
ATGCGCGCGCACCTTCTCGCCATCCTTGGCGTGCTCATCGGGGCGGCCAAGTCGTTCGCAGCAGAGGTCGACTATTCGAAGGCTCCGATCGAGACCCTGATCTCCGACCTCACGCTCGTGCAGACGGAAGCTCCTGGTCTTCAGAGCACCGCGACCTGGCGCGGCTTCATCGGAGATGATTCTCCGCCGGACTTCATGGCCGGTATCATTGGTTCGCCCCTGCCGGGCGCCGTCCCGCAGATGCGTGAACTCGTGCGTCGCGGCCCACGTGCGCTCGCGGCGCTGATCAGGCATCTGCGCGACGCGCGCCCGACGAAGCTGGCCGTGGGGATCGACAGCCAGGGATGGCCCGGCCGCCCTACCGTCGGGACCCAGATCTTCGGCAAGGAGTACGATCCAAGAACACCAGATGCCCGTTCGACATCCTGTAACTTCTCTCTGTCCTGCGAGGAAAAGAGCTTTCAGGGCGAGTACGTTGTGCGGGTCGGCGATATCGCATTCGGTCTGATCGGGCAGATCGTGAACCGGGCGCTCACGCCTGTTCGCTATCAGCCGACGGCGATACTGATCGTGAACTCGCCGGTCGAAACGCCGGAGATCGCATCGCTTGTCCGGCGCGATTGGAGCGGAGTCGATGCCGACGGCCTCAGAGTGTCGCTGTTCGCCGATCTGAGAGGCGAGTTCGAAGACCGCTATTCGCCGGCGCTCGCACGCCTGCGTCTCTACTATCGCGACGCCTACGATGCGCTGGACGGCCTCGACTTGAAGAAGCGCCTGGCCTTCGAGAACGAGGAACAGCGGGCAAGGCAGAAAGCCGCAGAGGCTGCACAACATCCTGCCGGACCGCCGATTGCGTCTTCCGGGTCGATTCTCGATAGCCTCGTCGGGGGATGCCAACCCTTGGCCGCGTGCCTCGAGGCTCTGGACGAAGGCATCCGAAAGCGGTCGGGACGCCTCGGCAATGTCCCTGCTGTCGCGAGACATCTCGAAACCTTCGGCGAAGCGGCCAAGAAGGCGCTTCTCGAACGCGCGACCGACCCCGATGAGCGCTGGCGGTGGGCAGCCGGTGATCTGCTCGGACAATGGCGAACTTTGTCAGAGCAAGACATCGGGCCGCTGCTCGTTGCCAGCCGGATGCAGCGGGGCAGAACGGCGGCCTACGCCCTGGCAAGGATTGGCTCGCCCGAAGCCATTCGTGCGCTCGCAAGACGTATCGAGATCTATGGCAATGTCGACGTAACCGGCGAAGCTCTTGCCAGTCTGGGGAGCAAGGCGTTGCCTCATCTGCTCCCGGTTCTGATGAACGACGACCGGTGGATGGATGCCACCGCCATCATCGGCAAGATGGGACAGCGCGCGGCGCCCGGCGATTGGGGCGTGCTTGCCGCCGATCCGCGGCGGCCGATCGACGAGCGGATCGCCGCCTTGCGTGGACTGTCGGCGATGGGGGAGCAAGCCCGCGGCACCGGCGACGCCATCGCCCCGCTGCTCCACAGCCGAGACGCAAGGCTGCGCGCTGCCGCAGACGATGCCTTGACCAAGATGCACTACCCGGCTGTGATCGAACGCGACGTTCGCGGCTGCGTTCCCCTGTCCGACGCTTTCTCATCGCGCGGCTCGGACGGAGGCTGCCTGGGCAGAATCGCCAGCTACGGCGGCGCGGCGGCTGAGTTCGGGCGGATCATCGCGGAGAGGTTCCTGGACTCGCCGAACGGCTCCGACCGCCGCGATGCAGCAACGGCGCTCGGCTATATCGATGACCAGGCGGCAGCGCCGCGATTGATCGAACTGCTGTCCGATCCGGATTGGCGTGTGGTCTATGCATCGGCCCGCGCGCTCGGCTGGCTCGGTTCGCAGGATGCCATCCCCGCGCTCGAACGCGTCGCGGCGACCCACTGGCTCATGGAAGTCCGTGCTCAGGCACAGTCGTCGGCCTCCGTGATGCGCACGCCCGAACAGCGTATCGCCAAGAGAGCTATGGGCTCTTCGTCTTCCCAGGACGATGTGTTTGCGCCCAATCCCGTGATCGGTTCCGTTCCTCCCGCTTGCATGGGGAGCGGATGTCCTCCCGCTTGCATGAGCGGCAAATGGTCCTGGCAGGGCGAAGCGTTTCAGCATCCGGCGACGGAGCAGCTGTCGATTGCCGTGCCCGCTTCCGGCGGGCGCGCCGCCGGACGAATGTCCGGCTCCGCCGCGTGGTCCGGCGACGGCGCTTTCGCCTGGGAGCCGCTGCGCGGCCGCAGGCAGATCTTGCGCGGTGTGGGCGTGCGCGGGATCCATGCAAGCAGCGACGGCGTGGTCGCGCTCCTCGGCGAGACCGCTGACTTCCGGTATTCCGCTTCGGAGAATATGCAGGCTTCTTATGGCGGTCGAGGGTTGCGGGGCGAGGCCTATGCCCTGCACGCGATCCGAGATGGCGCCGGCAACTGGAGGCTCAACGAGCTGGCGCGCCTGCCCTTGGGCGCGGATTCCTTCGCGAGTATCGGCCCCGATCTATACGCCGCATGGTCGAGCGACAGGGTCGTGGTGTTCTCCCTGCAGGGCATTCTCGGCCTCGCGACCTGCGTCGAGGCGCAATAG
PROTEIN sequence
Length: 860
MRAHLLAILGVLIGAAKSFAAEVDYSKAPIETLISDLTLVQTEAPGLQSTATWRGFIGDDSPPDFMAGIIGSPLPGAVPQMRELVRRGPRALAALIRHLRDARPTKLAVGIDSQGWPGRPTVGTQIFGKEYDPRTPDARSTSCNFSLSCEEKSFQGEYVVRVGDIAFGLIGQIVNRALTPVRYQPTAILIVNSPVETPEIASLVRRDWSGVDADGLRVSLFADLRGEFEDRYSPALARLRLYYRDAYDALDGLDLKKRLAFENEEQRARQKAAEAAQHPAGPPIASSGSILDSLVGGCQPLAACLEALDEGIRKRSGRLGNVPAVARHLETFGEAAKKALLERATDPDERWRWAAGDLLGQWRTLSEQDIGPLLVASRMQRGRTAAYALARIGSPEAIRALARRIEIYGNVDVTGEALASLGSKALPHLLPVLMNDDRWMDATAIIGKMGQRAAPGDWGVLAADPRRPIDERIAALRGLSAMGEQARGTGDAIAPLLHSRDARLRAAADDALTKMHYPAVIERDVRGCVPLSDAFSSRGSDGGCLGRIASYGGAAAEFGRIIAERFLDSPNGSDRRDAATALGYIDDQAAAPRLIELLSDPDWRVVYASARALGWLGSQDAIPALERVAATHWLMEVRAQAQSSASVMRTPEQRIAKRAMGSSSSQDDVFAPNPVIGSVPPACMGSGCPPACMSGKWSWQGEAFQHPATEQLSIAVPASGGRAAGRMSGSAAWSGDGAFAWEPLRGRRQILRGVGVRGIHASSDGVVALLGETADFRYSASENMQASYGGRGLRGEAYALHAIRDGAGNWRLNELARLPLGADSFASIGPDLYAAWSSDRVVVFSLQGILGLATCVEAQ*