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berkeley_reactor_200306_biofilm_scaffold_95231

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Displaying items 31-60 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_95231_31
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27788..28495
DNA (708bp) protein (236aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I347_AZOC5
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:BAF87978.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_95231_32
bacterium YEK0313, Bacteria

Not on your lists

comp(28506..30176)
DNA (1671bp) protein (557aa)
Putative hydrolase of the metallo-beta-lactamase superfamily n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0C3_9RHIZ
Putative ribonuclease J {ECO:0000313|EMBL:CEJ13208.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
metallo-beta-lactamase family hydrolase
berkeley_reactor_200306_biofilm_scaffold_95231_33
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30176..30940)
DNA (765bp) protein (255aa)
biotin-(acetyl-CoA carboxylase) ligase n=1 Tax=Xanthobacteraceae RepID=UPI000369F811
BirA, biotin-(Acetyl-CoA-carboxylase) ligase {ECO:0000313|EMBL:EIM29664.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
biotin--acetyl-CoA-carboxylase ligase
berkeley_reactor_200306_biofilm_scaffold_95231_34
bacterium YEK0313, Bacteria

Not on your lists

comp(31006..32439)
DNA (1434bp) protein (478aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
NADH-ubiquinone oxidoreductase chain N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N n=1 Tax=Rhodovulum sp. PH10 RepID=J6J6Y3_9RHOB
berkeley_reactor_200306_biofilm_scaffold_95231_35
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32456..33955)
DNA (1500bp) protein (500aa)
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:ABS69841.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABS69841.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IP95_XANP2
proton-translocating NADH-quinone oxidoreductase subunit M
berkeley_reactor_200306_biofilm_scaffold_95231_36
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33970..36090)
DNA (2121bp) protein (707aa)
NADH-ubiquinone oxidoreductase chain L {ECO:0000313|EMBL:ESR25123.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ESR25123.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
NADH dehydrogenase subunit L (EC:1.6.99.5)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035C77A0
berkeley_reactor_200306_biofilm_scaffold_95231_37
bacterium YEK0313, Bacteria

Not on your lists

comp(36095..36403)
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
NADH-quinone oxidoreductase subunit K n=1 Tax=Rhodovulum sp. PH10 RepID=J5PMU8_9RHOB
NADH-ubiquinone oxidoreductase chain 4L
berkeley_reactor_200306_biofilm_scaffold_95231_38
bacterium YEK0313, Bacteria

Not on your lists

comp(36406..37014)
DNA (609bp) protein (203aa)
Probable NADH dehydrogenase I chain J transmembrane protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IY00_POLGS
NADH-quinone oxidoreductase subunit J {ECO:0000313|EMBL:CEJ13214.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
nuoJ; NADH dehydrogenase I subunit J transmembrane protein
berkeley_reactor_200306_biofilm_scaffold_95231_39
bacterium YEK0313, Bacteria

Not on your lists

comp(37091..37585)
DNA (495bp) protein (165aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
NADH dehydrogenase subunit I n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D8AD6D
nuoI1; NADH dehydrogenase, chain I
berkeley_reactor_200306_biofilm_scaffold_95231_40
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37582..38631)
DNA (1050bp) protein (350aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
NADH:ubiquinone oxidoreductase subunit H n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F56AE1
nuoH1; NADH dehydrogenase superfamily
berkeley_reactor_200306_biofilm_scaffold_95231_41
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38641..40704)
DNA (2064bp) protein (688aa)
NADH-quinone oxidoreductase, chain G n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ25_STAND
NADH-quinone oxidoreductase, chain G {ECO:0000313|EMBL:KFC69028.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NADH-quinone oxidoreductase subunit G
berkeley_reactor_200306_biofilm_scaffold_95231_42
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40876..42177)
DNA (1302bp) protein (434aa)
NADH dehydrogenase subunit I F (EC:1.6.99.5)
NADH dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E8CA26
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:KFC69029.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
berkeley_reactor_200306_biofilm_scaffold_95231_43
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42187..43389)
DNA (1203bp) protein (401aa)
NADH-quinone oxidoreductase, E subunit {ECO:0000313|EMBL:ACB79191.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ACB79191.1};; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E39930
NADH-quinone oxidoreductase subunit E
berkeley_reactor_200306_biofilm_scaffold_95231_44
bacterium YEK0313, Bacteria

Not on your lists

comp(43525..44709)
DNA (1185bp) protein (395aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
NADH dehydrogenase subunit D n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031F1134
NADH dehydrogenase subunit D
berkeley_reactor_200306_biofilm_scaffold_95231_45
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44709..45311)
DNA (603bp) protein (201aa)
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.3)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
NADH dehydrogenase subunit C n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D76C35
berkeley_reactor_200306_biofilm_scaffold_95231_46
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45353..45940)
DNA (588bp) protein (196aa)
NADH-quinone oxidoreductase subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
NADH dehydrogenase subunit B n=1 Tax=Xanthobacteraceae bacterium 501b RepID=UPI00035F3FB4
nuoB1; NADH dehydrogenase subunit B
berkeley_reactor_200306_biofilm_scaffold_95231_47
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45931..46296)
DNA (366bp) protein (122aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A459AE
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
berkeley_reactor_200306_biofilm_scaffold_95231_trna_10
unknown

Not on your lists

comp(46651..46724)
DNA (74bp)
transferRNA Asp
berkeley_reactor_200306_biofilm_scaffold_95231_48
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46811..47167)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G6Q6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EAU42658.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
berkeley_reactor_200306_biofilm_scaffold_95231_49
unknown

Not on your lists

comp(47317..47505)
DNA (189bp) protein (63aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_50
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47569..48915)
DNA (1347bp) protein (449aa)
Cyclopropane-fatty-acyl-phospholipid synthase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QVG1_BREDI
Cyclopropane-fatty-acyl-phospholipid synthase family protein {ECO:0000313|EMBL:EGF96590.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
cyclopropane-fatty-acyl-phospholipid synthase
berkeley_reactor_200306_biofilm_scaffold_95231_51
unknown

Not on your lists

49197..49379
DNA (183bp) protein (61aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_52
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49884..50939
DNA (1056bp) protein (352aa)
Alcohol dehydrogenase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LL72_9RHOB
Alcohol dehydrogenase {ECO:0000313|EMBL:EJW13423.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
alcohol dehydrogenase zinc-binding domain protein
berkeley_reactor_200306_biofilm_scaffold_95231_53
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50954..51907
DNA (954bp) protein (318aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0V8_9SPHN
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AGH48558.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
berkeley_reactor_200306_biofilm_scaffold_95231_54
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51914..53710)
DNA (1797bp) protein (599aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000375DB5E
cytochrome c biogenesis protein, transmembrane region
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:CCB66334.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
berkeley_reactor_200306_biofilm_scaffold_95231_55
Leptolyngbya sp. PCC 7376, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(53865..54512)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030CF6D8
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:AFY40188.1}; TaxID=111781 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7376.;"
berkeley_reactor_200306_biofilm_scaffold_95231_56
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54602..57181)
DNA (2580bp) protein (860aa)
PBS lyase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVD0_9GAMM
PBS lyase {ECO:0000313|EMBL:EIL91171.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_trna_9
unknown

Not on your lists

comp(57464..57536)
DNA (73bp)
transferRNA Val
berkeley_reactor_200306_biofilm_scaffold_95231_57
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57667..60096)
DNA (2430bp) protein (810aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1F4_STAND
berkeley_reactor_200306_biofilm_scaffold_95231_58
unknown

Not on your lists

60228..60419
DNA (192bp) protein (64aa)

This feature has no annotations

Displaying items 31-60 of 373 in total

View Taxonomy