name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_95231_1
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3..743)
|
Putative cysteine desulfurase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IFH6_AZOC5
cysteine desulfurase
Putative cysteine desulfurase {ECO:0000313|EMBL:BAF89614.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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berkeley_reactor_200306_biofilm_scaffold_95231_2
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
996..1649
|
alpha/beta hydrolase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000364592E
putative alpha/beta hydrolase domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50558.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
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berkeley_reactor_200306_biofilm_scaffold_95231_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1712..2212
|
GCN5-related N-acetyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9Q3_NITMU
Putative acyltransferase with acyl-CoA N-acyltransferase domain protein {ECO:0000313|EMBL:KFC67169.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GCN5-like N-acetyltransferase
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2235..2714
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031FBEF6
GCN5 family acetyltransferase {ECO:0000313|EMBL:KFG69092.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
acetyltransferase
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2736..3890)
|
Mandelate racemase/muconate lactonizing protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0N9_STAND
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ADH91360.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
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berkeley_reactor_200306_biofilm_scaffold_95231_6
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3909..4688)
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003701E46
Short-chain dehydrogenase {ECO:0000313|EMBL:ESX79407.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
short-chain dehydrogenase/reductase SDR
|
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berkeley_reactor_200306_biofilm_scaffold_95231_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4685..5488)
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036388A1
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDX55545.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC-type spermidine/putrescine transport system, permease component II
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_8
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5491..6330)
|
UPI0003CF1C37 related cluster n=1 Tax=unknown RepID=UPI0003CF1C37
ABC transporter permease {ECO:0000313|EMBL:ESY86757.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
ABC-type spermidine/putrescine transport system, permease component I
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_9
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6330..7382)
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000377DDC1
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADV14321.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
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berkeley_reactor_200306_biofilm_scaffold_95231_10
Thermobaculum terrenum, Thermobaculum, Bacteria
|
Not on your lists |
comp(7385..8596)
|
mandelate racemase/muconate lactonizing protein n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628A80
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ACZ43407.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_11
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
|
Not on your lists |
comp(8680..9738)
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037AED34
Uncharacterized protein {ECO:0000313|EMBL:AKG36303.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
ABC transporter periplasmic protein
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_12
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9780..10448)
|
Transcriptional regulator, GntR family n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PS98_RHOS1
pdhR; GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABN79214.1}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10883..11821
|
Esterase/lipase n=1 Tax=Rhodanobacter denitrificans RepID=M4NET8_9GAMM
esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:AGG89319.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11874..12359)
|
Flavin reductase domain protein FMN-binding protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1L8_STAND
flavin reductase
Flavin reductase domain protein FMN-binding protein {ECO:0000313|EMBL:ADH91443.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
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berkeley_reactor_200306_biofilm_scaffold_95231_15
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12486..13160
|
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y545_9RHIZ
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHH13096.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_16
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13167..15008)
|
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=2 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G171_9RHIZ
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15167..16738)
|
Glucose-methanol-choline oxidoreductase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5R9_STAND
glucose-methanol-choline oxidoreductase
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:ADH90034.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16751..17287)
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037D95EF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH90035.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_19
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17323..17709)
|
lactoylglutathione lyase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F69887
Lactoylglutathione lyase {ECO:0000313|EMBL:KFG69719.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
lactoylglutathione lyase
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_20
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17728..18147)
|
Cytochrome c class I n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EK52_METSB
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ACK50592.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_21
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18236..18553)
|
arylsulfate sulfotransferase n=1 Tax=Xanthobacteraceae RepID=UPI00036B8B83
arylsulfate sulfotransferase-like protein
Uncharacterized arylsulfate sulfotransferase-like protein {ECO:0000313|EMBL:ADH90038.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_22
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18680..19420)
|
Transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I326_AZOC5
gntR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAF87972.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_23
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19614..20402
|
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.20)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PKR3_9RHOB
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:EJW11362.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
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berkeley_reactor_200306_biofilm_scaffold_95231_24
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20404..21552
|
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IH51_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF86172.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_25
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21549..22589
|
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AXL0_AZOBR
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (4-(phosphohydroxy)-L-threonine dehydrogenase)
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_26
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22604..23758
|
Iron alcohol dehydrogenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I328_AZOC5
iron alcohol dehydrogenase
Iron alcohol dehydrogenase {ECO:0000313|EMBL:BAF87973.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_27
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23758..24954
|
Putative glycosyl hydrolase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I330_AZOC5
glycosyl hydrolase
Putative glycosyl hydrolase {ECO:0000313|EMBL:BAF87974.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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|
berkeley_reactor_200306_biofilm_scaffold_95231_28
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24987..25805
|
Putative ABC transporter ATP-binding component n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I332_AZOC5
ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding component {ECO:0000313|EMBL:BAF87975.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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berkeley_reactor_200306_biofilm_scaffold_95231_29
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25805..26668
|
Putative ABC-type nitrate/sulfonate/bicarbonate transport system permease component n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I342_AZOC5
nitrate/sulfonate/bicarbonate ABC transporter permease
Putative ABC-type nitrate/sulfonate/bicarbonate transport system permease component {ECO:0000313|EMBL:BAF87976.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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berkeley_reactor_200306_biofilm_scaffold_95231_30
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26721..27788
|
Putative ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic component n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I344_AZOC5
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
Putative ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic component {ECO:0000313|EMBL:BAF87977.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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