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berkeley_reactor_200306_biofilm_scaffold_95231

Search features with annotation key words

Displaying items 61-90 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_95231_trna_1
unknown

Not on your lists

60515..60588
DNA (74bp)
transferRNA Tyr
berkeley_reactor_200306_biofilm_scaffold_95231_trna_2
unknown

Not on your lists

60589..60661
DNA (73bp)
transferRNA Undet
berkeley_reactor_200306_biofilm_scaffold_95231_59
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60986..62089
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T5Z2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE01869.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_60
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62155..62970)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037845B0
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS66387.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_95231_61
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63066..64328)
DNA (1263bp) protein (421aa)
clpX; ATP-dependent protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0THL6_9BRAD
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
berkeley_reactor_200306_biofilm_scaffold_95231_62
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64554..65189)
DNA (636bp) protein (212aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000255|HAMAP-Rule:MF_00444}; EC=3.4.21.92 {ECO:0000255|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000255|HAMAP-Rule:MF_00444}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Xanthobacteraceae RepID=UPI00035D2927
clpP; ATP-dependent Clp protease proteolytic subunit
berkeley_reactor_200306_biofilm_scaffold_95231_63
bacterium YEK0313, Bacteria

Not on your lists

comp(65407..66765)
DNA (1359bp) protein (453aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Trigger factor n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZV7_9RHIZ
tig; trigger factor
berkeley_reactor_200306_biofilm_scaffold_95231_trna_8
unknown

Not on your lists

comp(66841..66922)
DNA (82bp)
transferRNA Leu
berkeley_reactor_200306_biofilm_scaffold_95231_64
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67079..68329
DNA (1251bp) protein (417aa)
multicopper oxidase n=1 Tax=Methylocystis rosea RepID=UPI00036FC71A
multicopper oxidase type 3
Multicopper oxidase type 3 {ECO:0000313|EMBL:ACK51827.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_95231_65
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68337..69836)
DNA (1500bp) protein (500aa)
Uncharacterized conserved protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HYD7_AZOC5
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:BAF87601.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_95231_66
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70153..70491
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILC1_XANP2
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ABS68814.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_95231_67
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70560..71969
DNA (1410bp) protein (470aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Glutamine synthetase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1G0_STAND
glutamine synthetase
berkeley_reactor_200306_biofilm_scaffold_95231_68
unknown

Not on your lists

comp(72036..72236)
DNA (201bp) protein (67aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_69
bacterium YEK0313, Bacteria

Not on your lists

72361..73992
DNA (1632bp) protein (544aa)
Histidine ammonia-lyase (EC:4.3.1.3)
Histidine ammonia-lyase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSZ8_9RHIZ
Histidine ammonia-lyase {ECO:0000313|EMBL:CEJ14539.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
berkeley_reactor_200306_biofilm_scaffold_95231_70
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74025..74333
DNA (309bp) protein (103aa)
Blr1249 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89V09_BRADU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ65717.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
berkeley_reactor_200306_biofilm_scaffold_95231_71
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74413..75342
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378AF49
Fructokinase {ECO:0000313|EMBL:EKF19833.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ribokinase-like domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_95231_trna_3
unknown

Not on your lists

75440..75510
DNA (71bp)
transferRNA Gln
berkeley_reactor_200306_biofilm_scaffold_95231_72
unknown

Not on your lists

75743..76096
DNA (354bp) protein (118aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_73
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76231..77280
DNA (1050bp) protein (350aa)
ATP-dependent DNA ligase clustered with Ku protein, LigD {ECO:0000313|EMBL:KIV60899.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KIV60899.1};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
ATP-dependent DNA ligase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037392E0
ATP-dependent DNA ligase
berkeley_reactor_200306_biofilm_scaffold_95231_74
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77551..78513
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKU1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC66582.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_75
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78630..79586
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E4FAB0
Uncharacterized protein {ECO:0000313|EMBL:KHJ55205.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
transcriptional regulatory protein AraC family
berkeley_reactor_200306_biofilm_scaffold_95231_76
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79657..80802
DNA (1146bp) protein (382aa)
N-ethylmaleimide reductase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QVL4_9DELT
N-ethylmaleimide reductase {ECO:0000313|EMBL:EPX60693.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
NADH:flavin oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_95231_77
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80819..81181)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RVC8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD85905.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
berkeley_reactor_200306_biofilm_scaffold_95231_78
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81190..81504)
DNA (315bp) protein (105aa)
UPI0003CF0771 related cluster n=1 Tax=unknown RepID=UPI0003CF0771
Uncharacterized protein {ECO:0000313|EMBL:ESW93031.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_79
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81575..82246)
DNA (672bp) protein (224aa)
Dimethylmenaquinone methyltransferase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D058_9RHIZ
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EDQ34931.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_80
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82286..83317)
DNA (1032bp) protein (344aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WLW7_PANSA
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein {ECO:0000313|EMBL:ADU72402.1}; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
berkeley_reactor_200306_biofilm_scaffold_95231_81
Octadecabacter antarcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83310..83807)
DNA (498bp) protein (166aa)
glyoxalase n=1 Tax=Ruegeria conchae RepID=UPI0002378D7B
lactoylglutathione lyase family protein
Lactoylglutathione lyase family protein {ECO:0000313|EMBL:AGI68625.1}; TaxID=391626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter antarcticus 307.;"
berkeley_reactor_200306_biofilm_scaffold_95231_82
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83804..84787)
DNA (984bp) protein (328aa)
ABC transporter permease n=1 Tax=Ruegeria conchae RepID=UPI0002378D79
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component {ECO:0000313|EMBL:KGB27091.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
sugar ABC transporter permease protein
berkeley_reactor_200306_biofilm_scaffold_95231_83
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(84784..86304)
DNA (1521bp) protein (507aa)
ABC transporter related id=2792979 bin=GWF1_Rhodobacteraceae_65_7 species=Nakamurella multipartita genus=Nakamurella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACV77931.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
berkeley_reactor_200306_biofilm_scaffold_95231_84
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86355..87398)
DNA (1044bp) protein (348aa)
RbsB protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D050_9RHIZ
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EDQ34926.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
sugar ABC transporter periplasmatic substrate-binding protein
Displaying items 61-90 of 373 in total

View Taxonomy