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berkeley_reactor_200306_biofilm_scaffold_95231_73

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 76231..77280

Top 3 Functional Annotations

Value Algorithm Source
ATP-dependent DNA ligase clustered with Ku protein, LigD {ECO:0000313|EMBL:KIV60899.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KIV60899.1};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.7
  • Coverage: 344.0
  • Bit_score: 400
  • Evalue 1.60e-108
ATP-dependent DNA ligase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037392E0 similarity UNIREF
DB: UNIREF100
  • Identity: 58.1
  • Coverage: 344.0
  • Bit_score: 409
  • Evalue 3.20e-111
ATP-dependent DNA ligase similarity KEGG
DB: KEGG
  • Identity: 58.7
  • Coverage: 344.0
  • Bit_score: 400
  • Evalue 4.20e-109

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Taxonomy

Rhizobium sp. UR51a → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1050
ATGGCAAAGCCCAGACACCCGCGCAGCCGCGCGCACGGCCTGCCGCCGGCCGCCATGGTCCGGCGCGCCCTGCCCTCGCGCATCGATCCGGCCCAGCCGGCGCTCGCGCTCGATCCGATGCCGACGCGGATCGAGCCTTGCCTGGCGCTGCTGGCGCCGAAGCTGCCGACGGGGGCCGATTGGGCCTATGAGGTCAAGCTCGACGGGTACAGGCTCGCCGTGCATGTCGAGCCCAGCGGCGTGCGGCTGCTGACGCGCGCCGGCCACGACTGGACGCATCGCTTCCCGGCCATCGCCGATGCGGCGCGCGCCCTCGGCCCCGCCACGCTGATCCTCGACGGCGAGGCCGTGGTTCTGGACGGCGAGGGCCGTTCCGATTTCGGCCTGCTGCAACGGGCGCTCGGCGGCGGTGGCGGCACGCGCGCCGCCGTCGAGGCGGTCCTCTACGCCTTCGACCTGCTGTATGCGGACGGACGCGACATCGGCCGCATGCCTCTCGCCGAGCGCCGGCAGATGCTGGAGACGATCGTGCCCGCCGGCGGCTCGGGGGCGATCCGCCTGTCCGAGGAGATCGCCGCCGGGGGCGAGGCGCTTCTGCGCGCCGCCTGCAAGCAGGGGCTCGAAGGCGTCGTCGCCAAGCATCGCGACCGCCCCTATCGCAGCGGCCGGCACGACGACTGGCTGAAGGTCAAATGCGCGCAGTCCGACAGCTTCGCGGTGATCGGCTACGAGCCCTCGGCCACGCTTCCCGGCGCCATCGACAGCCTGGTGCTCGCGGCGCGGCGCGGCGACGCGCTGGTCCATGTCGGCGAGGTCGGCATCGGCTTCACCCAGCTTTCGGCCTGGGCGCTGCGCGAGGAGCTGGACCGGATCCGCACCGGCAAGCCGCAACTGCCGATCAAGGACAGACGCATCGTCTGGGTGAAGCCCGTCCGGGTCGCCGAGATCGAGCATCGCGGGTGGACGAAGGACGGGACGCTCCGGCACCCCTCGTTCAAGGGCCTGCGCGACGAGGCGGACGCGGCCGGGGTGTGCCGGATCGACGCGTGA
PROTEIN sequence
Length: 350
MAKPRHPRSRAHGLPPAAMVRRALPSRIDPAQPALALDPMPTRIEPCLALLAPKLPTGADWAYEVKLDGYRLAVHVEPSGVRLLTRAGHDWTHRFPAIADAARALGPATLILDGEAVVLDGEGRSDFGLLQRALGGGGGTRAAVEAVLYAFDLLYADGRDIGRMPLAERRQMLETIVPAGGSGAIRLSEEIAAGGEALLRAACKQGLEGVVAKHRDRPYRSGRHDDWLKVKCAQSDSFAVIGYEPSATLPGAIDSLVLAARRGDALVHVGEVGIGFTQLSAWALREELDRIRTGKPQLPIKDRRIVWVKPVRVAEIEHRGWTKDGTLRHPSFKGLRDEADAAGVCRIDA*