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berkeley_reactor_200306_biofilm_scaffold_95231

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Displaying items 91-120 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_95231_85
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87437..88312)
DNA (876bp) protein (292aa)
Gluconolactonase {ECO:0000313|EMBL:EDQ34925.1}; EC=3.1.1.15 {ECO:0000313|EMBL:EDQ34925.1};; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
regucalcin n=1 Tax=Ruegeria conchae RepID=UPI0002378D76
SMP-30 family protein
berkeley_reactor_200306_biofilm_scaffold_95231_86
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88444..89163
DNA (720bp) protein (240aa)
Transcriptional regulator, GntR family n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WLW6_PANSA
transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADU72401.1}; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
berkeley_reactor_200306_biofilm_scaffold_95231_87
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89659..91185
DNA (1527bp) protein (509aa)
Mlr2187 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IY7_RHILO
hypothetical protein
Mlr2187 protein {ECO:0000313|EMBL:BAB49379.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_95231_88
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91252..94032)
DNA (2781bp) protein (927aa)
UPI0003CFB18B related cluster n=1 Tax=unknown RepID=UPI0003CFB18B
Uncharacterized protein {ECO:0000313|EMBL:ESZ10168.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
berkeley_reactor_200306_biofilm_scaffold_95231_89
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94029..96647)
DNA (2619bp) protein (873aa)
UPI0003D0286A related cluster n=1 Tax=unknown RepID=UPI0003D0286A
Uncharacterized protein {ECO:0000313|EMBL:ESZ10169.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
berkeley_reactor_200306_biofilm_scaffold_95231_90
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96672..97700)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI000378CAED
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:KFB67380.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
ATPase-like protein
berkeley_reactor_200306_biofilm_scaffold_95231_91
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97723..99393)
DNA (1671bp) protein (557aa)
UPI0003CFDA58 related cluster n=1 Tax=unknown RepID=UPI0003CFDA58
Uncharacterized protein {ECO:0000313|EMBL:ESZ10173.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_92
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99722..100795)
DNA (1074bp) protein (358aa)
Tartrate dehydrogenase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHL8_9RHOB
Tartrate dehydrogenase {ECO:0000313|EMBL:KGM35678.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Tartrate dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_95231_93
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100812..101852)
DNA (1041bp) protein (347aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAA7_STAND
berkeley_reactor_200306_biofilm_scaffold_95231_94
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102139..103125
DNA (987bp) protein (329aa)
Fluoroacetate dehalogenase {ECO:0000313|EMBL:CDX30416.1}; EC=3.8.1.3 {ECO:0000313|EMBL:CDX30416.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Alpha/beta hydrolase fold n=1 Tax=Rhizobium sp. RepID=L0NBE2_RHISP
alpha/beta hydrolase fold protein
berkeley_reactor_200306_biofilm_scaffold_95231_95
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103193..104137)
DNA (945bp) protein (315aa)
Threonine dehydratase n=1 Tax=Rhizobium sp. CF122 RepID=J2IJ45_9RHIZ
Threonine dehydratase {ECO:0000313|EMBL:EJL48728.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
pyridoxal-5'-phosphate-dependent protein beta subunit
berkeley_reactor_200306_biofilm_scaffold_95231_96
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104227..104688
DNA (462bp) protein (154aa)
Transcriptional regulator, AsnC family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B3H3_RHILS
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:AHF82700.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
berkeley_reactor_200306_biofilm_scaffold_95231_97
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104828..105154
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00035DA1D4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP72904.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
berkeley_reactor_200306_biofilm_scaffold_95231_98
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105168..106259)
DNA (1092bp) protein (364aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
Isocitrate/isopropylmalate dehydrogenase n=1 Tax=Rhizobium sp. CF080 RepID=J2KRR2_9RHIZ
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:KGM35682.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
berkeley_reactor_200306_biofilm_scaffold_95231_99
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106271..107686)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5I4_RAMTT
Uncharacterized protein {ECO:0000313|EMBL:CDX30450.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_100
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107883..108590)
DNA (708bp) protein (236aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J3CP88_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:CDX30449.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
bacterial regulatory s, gntR family protein
berkeley_reactor_200306_biofilm_scaffold_95231_101
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108825..110570)
DNA (1746bp) protein (582aa)
Candidate ABC type Fe3+ transport system, permease component with duplicated domains n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5I2_RAMTT
Candidate ABC type Fe3+ transport system, permease component with duplicated domains {ECO:0000313|EMBL:CDX30446.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
iron ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_95231_102
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110567..111613)
DNA (1047bp) protein (349aa)
Candidate ABC type Fe3+ transport system, periplasmic component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5I1_RAMTT
Candidate ABC type Fe3+ transport system, periplasmic component {ECO:0000313|EMBL:CDX30443.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
iron ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_95231_103
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111691..112758)
DNA (1068bp) protein (356aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:CDX30440.1}; EC=3.6.3.31 {ECO:0000313|EMBL:CDX30440.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5I3_RAMTT
afuC; ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_95231_104
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112877..113422)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00031C030B
Chromate transporter {ECO:0000313|EMBL:CDX30437.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
chromate transporter
berkeley_reactor_200306_biofilm_scaffold_95231_105
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113409..113993)
DNA (585bp) protein (195aa)
Chromate transporter n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LR82_BURGS
Chromate transporter {ECO:0000313|EMBL:CDX30434.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Chromate transporter
berkeley_reactor_200306_biofilm_scaffold_95231_106
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114103..114786
DNA (684bp) protein (228aa)
GntR family transcriptional regulator n=1 Tax=Xanthobacteraceae RepID=UPI0003742D96
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDX30431.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_95231_107
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114824..115867
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NBH3_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KEQ04210.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
putative BUG-like extracytoplasmic solute binding receptor, TTT family
berkeley_reactor_200306_biofilm_scaffold_95231_108
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115864..116442
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000382B199
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:KFC73063.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
berkeley_reactor_200306_biofilm_scaffold_95231_109
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116451..117941
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJB2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR52688.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_110
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117938..119320
DNA (1383bp) protein (461aa)
MmgE/PrpD family protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T8I0_BURPP
MmgE/PrpD family protein
MmgE/PrpD family protein {ECO:0000313|EMBL:ACD20544.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
berkeley_reactor_200306_biofilm_scaffold_95231_111
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119317..120069
DNA (753bp) protein (251aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:CDX30428.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CDX30428.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T8H6_BURPP
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_95231_112
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120133..121467
DNA (1335bp) protein (445aa)
MmgE/PrpD family protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022P6_SOLUE
MmgE/PrpD family protein {ECO:0000313|EMBL:CDX30425.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
MmgE/PrpD family protein
berkeley_reactor_200306_biofilm_scaffold_95231_113
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121629..121808)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QM73_METTR
Uncharacterized protein {ECO:0000313|EMBL:GAJ30791.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_114
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122071..122337)
DNA (267bp) protein (89aa)
Prevent-host-death family protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QM72_METTR
Prevent-host-death protein {ECO:0000313|EMBL:KJB93421.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
prevent-host-death family protein
Displaying items 91-120 of 373 in total

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