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berkeley_reactor_200306_biofilm_scaffold_95231

Search features with annotation key words

Displaying items 121-150 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_95231_115
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122448..123476)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003640198
Metal-dependent hydrolase {ECO:0000313|EMBL:EJJ29343.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
metal-dependent hydrolase
berkeley_reactor_200306_biofilm_scaffold_95231_116
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123501..124610)
DNA (1110bp) protein (370aa)
ugpC-2; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC 2 (EC:3.6.3.20)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000256|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000256|HAMAP-Rule:MF_01727};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
sn-glycerol-3-phosphate ABC transporter ATP-binding protein n=1 Tax=Kaistia granuli RepID=UPI000374AAC1
berkeley_reactor_200306_biofilm_scaffold_95231_117
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124642..125556)
DNA (915bp) protein (305aa)
ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI000360F0D1
transmembrane component of ABC transporter protein
Transmembrane component of ABC transporter protein {ECO:0000313|EMBL:EJT04537.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
berkeley_reactor_200306_biofilm_scaffold_95231_118
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125566..126450)
DNA (885bp) protein (295aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AV39_RHILS
ABC transporter permease
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS57636.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_95231_119
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126519..127874)
DNA (1356bp) protein (452aa)
sn-glycerol 3-phosphate ABC transporter n=1 Tax=Kaistia granuli RepID=UPI000363E7A0
ugpBch2; sn-glycerol 3-phosphate ABC transporter
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB {ECO:0000313|EMBL:GAJ96939.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
berkeley_reactor_200306_biofilm_scaffold_95231_120
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127985..129871)
DNA (1887bp) protein (629aa)
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
gamma-glutamyltransferase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000373ABAA
Gamma-glutamyltransferase {ECO:0000313|EMBL:KGM33780.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
berkeley_reactor_200306_biofilm_scaffold_95231_121
unknown

Not on your lists

129944..130231
DNA (288bp) protein (96aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_122
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130228..130800)
DNA (573bp) protein (191aa)
Lipid A 3-O-deacylase (PagL) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPU2_9RHIZ
Lipid A 3-O-deacylase (PagL) {ECO:0000313|EMBL:EIM25984.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_123
unknown

Not on your lists

131139..131474
DNA (336bp) protein (112aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_124
bacterium YEK0313, Bacteria

Not on your lists

131554..132882
DNA (1329bp) protein (443aa)
Molecular chaperone n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM03_9RHIZ
Chaperone protein HscA {ECO:0000313|EMBL:CEJ10213.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
molecular chaperone Hsp70
berkeley_reactor_200306_biofilm_scaffold_95231_125
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132902..134074)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Streptomyces prunicolor RepID=UPI0003738B0D
Esterase A {ECO:0000313|EMBL:CDP50754.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_126
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(134112..135299)
DNA (1188bp) protein (396aa)
CoA transferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031BB6BD
CoA-transferase {ECO:0000313|EMBL:KFG67775.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
L-carnitine dehydratase/bile acid-inducible protein F
berkeley_reactor_200306_biofilm_scaffold_95231_127
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135312..136721)
DNA (1410bp) protein (470aa)
Glu-tRNA amidotransferase, subunit A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENI5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM34502.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
amidase protein
berkeley_reactor_200306_biofilm_scaffold_95231_128
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136884..138107
DNA (1224bp) protein (408aa)
Major facilitator superfamily MFS_1 n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AK80_MARMM
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABI67313.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
berkeley_reactor_200306_biofilm_scaffold_95231_129
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138193..139200
DNA (1008bp) protein (336aa)
Beta-lactamase family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LS65_RHITR
beta-lactamase family protein
Beta-lactamase family protein {ECO:0000313|EMBL:AGB72975.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_95231_130
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139204..139881
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000364B310
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AID29926.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
berkeley_reactor_200306_biofilm_scaffold_95231_131
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140013..140912)
DNA (900bp) protein (300aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Enterobacter cloacae S611 RepID=V5ACL9_ENTCL
Uncharacterized protein {ECO:0000313|EMBL:KDP72999.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_95231_132
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141053..142021
DNA (969bp) protein (323aa)
membrane protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003602F36
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:CCF00407.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
berkeley_reactor_200306_biofilm_scaffold_95231_133
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(142037..142951)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00037808EF
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EHR51309.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
ybfI; AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_95231_134
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142978..143598
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003809E69
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
berkeley_reactor_200306_biofilm_scaffold_95231_135
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

comp(143611..144498)
DNA (888bp) protein (296aa)
Dienelactone hydrolase id=2315293 bin=GWB2_Nitrospirae_rel_47_37 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
dienelactone hydrolase
Tax=GWB2_Nitrospirae_47_37_curated
berkeley_reactor_200306_biofilm_scaffold_95231_136
unknown

Not on your lists

144660..144977
DNA (318bp) protein (106aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_137
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145012..145779
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B4170
Regulatory protein GntR HTH {ECO:0000313|EMBL:CCV15990.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_95231_138
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146038..147009
DNA (972bp) protein (324aa)
ABC transporter n=2 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GHC2_9RHIZ
ABC-type proline/glycine betaine transport system, periplasmic component
ABC transporter {ECO:0000313|EMBL:ESX53518.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
berkeley_reactor_200306_biofilm_scaffold_95231_139
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147078..148151
DNA (1074bp) protein (358aa)
ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFP8_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EHH09453.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
glycine betaine/L-proline transport ATP binding subunit
berkeley_reactor_200306_biofilm_scaffold_95231_140
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148442..150184
DNA (1743bp) protein (581aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YDW7_MESOW
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AEH90131.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
berkeley_reactor_200306_biofilm_scaffold_95231_141
unknown

Not on your lists

150228..150473
DNA (246bp) protein (82aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_142
unknown

Not on your lists

150577..150801
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_95231_143
bacterium YEK0313, Bacteria

Not on your lists

comp(150753..152285)
DNA (1533bp) protein (511aa)
D-galactarate dehydratase/Altronate hydrolase domain-containing protein (EC:4.2.1.42)
D-galactarate dehydratase/Altronate hydrolase domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IDI6_METNO
D-galactarate dehydratase {ECO:0000313|EMBL:CEJ13359.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
berkeley_reactor_200306_biofilm_scaffold_95231_144
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152344..153063
DNA (720bp) protein (240aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLI0_9RHIZ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDP51011.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
GntR family transcriptional regulator
Displaying items 121-150 of 373 in total

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