name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_95231_115
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(122448..123476)
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003640198
Metal-dependent hydrolase {ECO:0000313|EMBL:EJJ29343.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
metal-dependent hydrolase
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_116
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(123501..124610)
|
ugpC-2; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC 2 (EC:3.6.3.20)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000256|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000256|HAMAP-Rule:MF_01727};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
sn-glycerol-3-phosphate ABC transporter ATP-binding protein n=1 Tax=Kaistia granuli RepID=UPI000374AAC1
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_117
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(124642..125556)
|
ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI000360F0D1
transmembrane component of ABC transporter protein
Transmembrane component of ABC transporter protein {ECO:0000313|EMBL:EJT04537.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_118
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(125566..126450)
|
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AV39_RHILS
ABC transporter permease
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS57636.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
|
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berkeley_reactor_200306_biofilm_scaffold_95231_119
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(126519..127874)
|
sn-glycerol 3-phosphate ABC transporter n=1 Tax=Kaistia granuli RepID=UPI000363E7A0
ugpBch2; sn-glycerol 3-phosphate ABC transporter
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB {ECO:0000313|EMBL:GAJ96939.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
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berkeley_reactor_200306_biofilm_scaffold_95231_120
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(127985..129871)
|
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
gamma-glutamyltransferase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000373ABAA
Gamma-glutamyltransferase {ECO:0000313|EMBL:KGM33780.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
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berkeley_reactor_200306_biofilm_scaffold_95231_121
unknown
|
Not on your lists |
129944..130231
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_95231_122
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(130228..130800)
|
Lipid A 3-O-deacylase (PagL) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPU2_9RHIZ
Lipid A 3-O-deacylase (PagL) {ECO:0000313|EMBL:EIM25984.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_123
unknown
|
Not on your lists |
131139..131474
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_95231_124
bacterium YEK0313, Bacteria
|
Not on your lists |
131554..132882
|
Molecular chaperone n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM03_9RHIZ
Chaperone protein HscA {ECO:0000313|EMBL:CEJ10213.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
molecular chaperone Hsp70
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_125
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(132902..134074)
|
hypothetical protein n=1 Tax=Streptomyces prunicolor RepID=UPI0003738B0D
Esterase A {ECO:0000313|EMBL:CDP50754.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_126
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(134112..135299)
|
CoA transferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031BB6BD
CoA-transferase {ECO:0000313|EMBL:KFG67775.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
L-carnitine dehydratase/bile acid-inducible protein F
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_127
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(135312..136721)
|
Glu-tRNA amidotransferase, subunit A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENI5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM34502.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
amidase protein
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_128
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
136884..138107
|
Major facilitator superfamily MFS_1 n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AK80_MARMM
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABI67313.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
|
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berkeley_reactor_200306_biofilm_scaffold_95231_129
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
138193..139200
|
Beta-lactamase family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LS65_RHITR
beta-lactamase family protein
Beta-lactamase family protein {ECO:0000313|EMBL:AGB72975.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
|
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berkeley_reactor_200306_biofilm_scaffold_95231_130
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
139204..139881
|
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000364B310
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AID29926.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_131
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(140013..140912)
|
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Enterobacter cloacae S611 RepID=V5ACL9_ENTCL
Uncharacterized protein {ECO:0000313|EMBL:KDP72999.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_132
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
141053..142021
|
membrane protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003602F36
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:CCF00407.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
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berkeley_reactor_200306_biofilm_scaffold_95231_133
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(142037..142951)
|
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00037808EF
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EHR51309.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
ybfI; AraC family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_134
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
142978..143598
|
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003809E69
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_135
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria
|
Not on your lists |
comp(143611..144498)
|
Dienelactone hydrolase id=2315293 bin=GWB2_Nitrospirae_rel_47_37 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
dienelactone hydrolase
Tax=GWB2_Nitrospirae_47_37_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_136
unknown
|
Not on your lists |
144660..144977
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_95231_137
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
145012..145779
|
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B4170
Regulatory protein GntR HTH {ECO:0000313|EMBL:CCV15990.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
GntR family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_138
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
146038..147009
|
ABC transporter n=2 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GHC2_9RHIZ
ABC-type proline/glycine betaine transport system, periplasmic component
ABC transporter {ECO:0000313|EMBL:ESX53518.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
|
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berkeley_reactor_200306_biofilm_scaffold_95231_139
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
147078..148151
|
ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFP8_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EHH09453.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
glycine betaine/L-proline transport ATP binding subunit
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_140
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
148442..150184
|
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YDW7_MESOW
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AEH90131.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
|
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berkeley_reactor_200306_biofilm_scaffold_95231_141
unknown
|
Not on your lists |
150228..150473
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_95231_142
unknown
|
Not on your lists |
150577..150801
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_95231_143
bacterium YEK0313, Bacteria
|
Not on your lists |
comp(150753..152285)
|
D-galactarate dehydratase/Altronate hydrolase domain-containing protein (EC:4.2.1.42)
D-galactarate dehydratase/Altronate hydrolase domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IDI6_METNO
D-galactarate dehydratase {ECO:0000313|EMBL:CEJ13359.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_95231_144
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
152344..153063
|
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLI0_9RHIZ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDP51011.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
GntR family transcriptional regulator
|