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berkeley_reactor_200306_biofilm_scaffold_103592_25

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(20615..21556)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-70 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 41.4
  • Coverage: 326.0
  • Bit_score: 214
  • Evalue 3.80e-53
UPI0003CE2742 related cluster n=1 Tax=unknown RepID=UPI0003CE2742 similarity UNIREF
DB: UNIREF100
  • Identity: 43.5
  • Coverage: 331.0
  • Bit_score: 235
  • Evalue 5.60e-59
RNA polymerase sigma70 factor {ECO:0000313|EMBL:ESW82491.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.5
  • Coverage: 331.0
  • Bit_score: 235
  • Evalue 7.90e-59

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Taxonomy

Mesorhizobium sp. LSJC280B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 942
ATGCGCATGGAGGCATCGATCGCCGGTCCCGACGCTTCGAGCGCGCCCGATGCGTCGGGCGCCTTTTCCGCCCTGGCCGGCGCCCTGCACGCCGAGCTGCAGCGCCATTGCTATCGCATGATGGGCGGCCTGCAGGACGCCGAGGACTGCGTCCAGGAGACGCTGCTGCGCGGCTGGCGCGAGTTCGCCGGCCTGCGCGACGGGTCGGCGGGACGGTCATGGCTCTACAGCATCGCCACCCGCGTCTGCCTCGATGCCCTGCGCACGCGGCGGCGGCGGCAGGCCCTGTTCGGCCCGAGCCTCGACGAGGCCGAGCCGGGGTCGGAGCCATGGGTCGAGCCGTGGCCGGGCGGGGTTCCGCCGTCGGGCCCCGAGCGCGATCGGGACATCCGCCTAGCCTTCGTCTCGCTGCTGCACGGCCTCTCGCCGCGCGCCCGCGCCGTGCTGCTGCTGCACGACGGCGTGGGCATGACGGCGGCGGAAGCGGCGTCCGCGCTCGGCCTCAGCGTGGCGGCGGCGCGCAGCGCCCTGCAGCGCGCGCGGACCGCCCTGCCGCCGCAGGACGCCGTGGCGGCGGACGCCCCCGCGGTGGAGGCCTATGTCGAGGCCTGGAACGCCGGCGACGTCGATGCGCTGATCGGCCTGCTGCATCGGGACATCGTCCTCACCATGCCGCCATGGCACCGCACGTTCACCGGCCGCGAGGCGGTGGCACGCTTCATGACATCGGTCTGGCCGCGCTATGACGGCTTCCGCGCCGTGGCCGTCATCGCCAACGGCCAGCCGGCGGCGGCCGTCTATGCCAGCCGCGGCACCGGGTTCCATCTGCCGCATTCCCTGCACGTCCTGGCCGGGCGCGGCGAGATCGCCGAGATCGTCCTTTATGCGCCGCCCCTGGGCGCGAGCCTGTTTGCGGCGTTCGGCCTGCCCCCGACCGCCTGA
PROTEIN sequence
Length: 314
MRMEASIAGPDASSAPDASGAFSALAGALHAELQRHCYRMMGGLQDAEDCVQETLLRGWREFAGLRDGSAGRSWLYSIATRVCLDALRTRRRRQALFGPSLDEAEPGSEPWVEPWPGGVPPSGPERDRDIRLAFVSLLHGLSPRARAVLLLHDGVGMTAAEAASALGLSVAAARSALQRARTALPPQDAVAADAPAVEAYVEAWNAGDVDALIGLLHRDIVLTMPPWHRTFTGREAVARFMTSVWPRYDGFRAVAVIANGQPAAAVYASRGTGFHLPHSLHVLAGRGEIAEIVLYAPPLGASLFAAFGLPPTA*