ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_103592

Search features with annotation key words

Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_103592_1
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..363)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1M7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM34428.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_103592_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(457..1491)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI0003750C05
Sugar ABC transporter {ECO:0000313|EMBL:KGD96925.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
frcB; ABC transporter, substrate binding protein (sugar)
berkeley_reactor_200306_biofilm_scaffold_103592_3
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1690..2883
DNA (1194bp) protein (398aa)
ROK domain-containing protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B3H5_RHIRD
ROK family transcriptional regulator {ECO:0000313|EMBL:KGM34429.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ROK family protein
berkeley_reactor_200306_biofilm_scaffold_103592_4
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2937..3227
DNA (291bp) protein (97aa)
Prevent-host-death family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFD8_SPHWW
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ABQ71004.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
berkeley_reactor_200306_biofilm_scaffold_103592_5
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3224..3616
DNA (393bp) protein (131aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
UPI0003CE3177 related cluster n=1 Tax=unknown RepID=UPI0003CE3177
PIN domain protein
berkeley_reactor_200306_biofilm_scaffold_103592_6
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3732..4214
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000344B57E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB80417.1}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
berkeley_reactor_200306_biofilm_scaffold_103592_7
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4224..4784)
DNA (561bp) protein (187aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000304CC6E
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
berkeley_reactor_200306_biofilm_scaffold_103592_8
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4781..5932)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037E77A1
phosphonate metabolism protein PhnM
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:ACL59089.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_103592_9
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5880..6650)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EAC3C7
Phosphonate C-P lyase system protein PhnL {ECO:0000313|EMBL:EIZ85972.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
phosphonate C-P lyase system protein PhnL
berkeley_reactor_200306_biofilm_scaffold_103592_10
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6647..7438)
DNA (792bp) protein (264aa)
phosphonate C-P lyase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000304081A
phnK; phosphonate C-P lyase system protein PhnK
Phosphonate C-P lyase system protein PhnK {ECO:0000313|EMBL:ACL59087.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_103592_11
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7714..8619)
DNA (906bp) protein (302aa)
carbon-phosphorus lyase complex subunit PhnJ, partial n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00038009F0
phosphonate metabolism PhnJ
Phosphonate metabolism PhnJ {ECO:0000313|EMBL:ACA17327.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_103592_12
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8616..9719)
DNA (1104bp) protein (368aa)
carbon-phosphorus lyase complex subunit PhnI n=1 Tax=Kaistia granuli RepID=UPI000369C260
phosphonate metabolism protein
Phosphonate metabolism {ECO:0000313|EMBL:ACL59085.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_103592_13
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9720..10316)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E977D7
PhnH protein {ECO:0000313|EMBL:BAQ44656.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
phosphonate C-P lyase system protein PhnH
berkeley_reactor_200306_biofilm_scaffold_103592_14
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10316..10789)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036B9D0A
phosphonate C-P lyase system protein PhnG
Phosphonate C-P lyase system protein PhnG {ECO:0000313|EMBL:ACL59083.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_103592_15
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10844..11641
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037B01C6
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACA17331.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_103592_16
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11646..12527)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000368061F
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ45784.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
phosphonate ABC transporter inner membrane subunit
berkeley_reactor_200306_biofilm_scaffold_103592_17
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12524..13408)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C5C19
phosphonate ABC transporter inner membrane subunit
Phosphonate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACL59079.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_103592_18
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13725..14651)
DNA (927bp) protein (309aa)
Phosphonate ABC transporter, periplasmic phosphonate binding protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IV20_METNO
phosphonate ABC transporter periplasmic phosphonate binding protein
Phosphonate ABC transporter, periplasmic phosphonate binding protein {ECO:0000313|EMBL:ACL59078.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_103592_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14714..15520)
DNA (807bp) protein (269aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
Phosphonate import ATP-binding protein PhnC n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IJ46_9BRAD
phoC; phosphonates transport system nucleotide binding protein
berkeley_reactor_200306_biofilm_scaffold_103592_20
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15711..16367)
DNA (657bp) protein (219aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF122 RepID=J3BE72_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJL49671.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_103592_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16453..17547
DNA (1095bp) protein (365aa)
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Rhizobium sp. CF122 RepID=J2RAJ9_9RHIZ
putative PotD, Spermidine/putrescine-binding periplasmic protein PotD
Putative PotD, Spermidine/putrescine-binding periplasmic protein PotD {ECO:0000313|EMBL:AHK45269.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_103592_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17824..18687
DNA (864bp) protein (288aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000376FA53
potH; putrescine ABC transport system permease protein PotH
Putrescine ABC transport system permease protein PotH {ECO:0000313|EMBL:AHK45268.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_103592_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18689..19477
DNA (789bp) protein (263aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H5X4_RHILT
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJB05403.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
potC; Spermidine/putrescine transport system permease protein potC
berkeley_reactor_200306_biofilm_scaffold_103592_24
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19474..20583
DNA (1110bp) protein (370aa)
potG; putrescine transport system ATP-binding protein (EC:3.6.3.31)
Putative spermidine/putrescine transporter subunit ATP-binding component of ABC superfamily tranporter n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q5H0_9RHIZ
ABC-type spermidine/putrescine transport system, ATPase component {ECO:0000313|EMBL:EJL49675.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
berkeley_reactor_200306_biofilm_scaffold_103592_25
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20615..21556)
DNA (942bp) protein (314aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6)
UPI0003CE2742 related cluster n=1 Tax=unknown RepID=UPI0003CE2742
RNA polymerase sigma70 factor {ECO:0000313|EMBL:ESW82491.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
berkeley_reactor_200306_biofilm_scaffold_103592_26
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21556..22299)
DNA (744bp) protein (248aa)
UPI0003CF807F related cluster n=1 Tax=unknown RepID=UPI0003CF807F
Short-chain dehydrogenase {ECO:0000313|EMBL:ESW82492.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
short-chain dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_103592_27
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22413..23186)
DNA (774bp) protein (258aa)
ferredoxin--NADP reductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030B47FC
Ferredoxin-NADP reductase {ECO:0000313|EMBL:KGM34886.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
oxidoreductase FAD/NAD(P)-binding subunit
berkeley_reactor_200306_biofilm_scaffold_103592_28
unknown

Not on your lists

comp(23332..24108)
DNA (777bp) protein (259aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_103592_29
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24204..25841)
DNA (1638bp) protein (546aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SI72_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD93899.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
conserved exported hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_103592_30
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25962..26870)
DNA (909bp) protein (303aa)
GMP synthase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTW5_9RHIZ
GMP synthase family protein {ECO:0000313|EMBL:EIM27407.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative Glutamine amidotransferase, class-I
Displaying items 1-30 of 154 in total

View Taxonomy