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berkeley_reactor_200306_biofilm_scaffold_103592

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Displaying items 121-150 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_103592_121
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117495..118460
DNA (966bp) protein (322aa)
deacetylase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00037D1431
deacetylase
Uncharacterized protein {ECO:0000313|EMBL:EHH08174.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
berkeley_reactor_200306_biofilm_scaffold_103592_122
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118505..119185
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XQI2_RHIRD
Esterase {ECO:0000313|EMBL:KDR86328.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
esterase
berkeley_reactor_200306_biofilm_scaffold_103592_123
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119383..120051
DNA (669bp) protein (223aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Acidovorax RepID=CLPX_ACIET
clpX; ATP-dependent protease ATP-binding subunit clpx
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
berkeley_reactor_200306_biofilm_scaffold_103592_124
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120214..121095
DNA (882bp) protein (294aa)
NmrA family protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDL9_BEII9
NmrA family protein
NmrA family protein {ECO:0000313|EMBL:ACB95455.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_103592_125
Burkholderia pyrrocinia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121138..121599
DNA (462bp) protein (154aa)
Transcriptional regulator, MarR family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDL8_BEII9
Transcriptional regulator {ECO:0000313|EMBL:KFL52004.1}; TaxID=60550 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia pyrrocinia (Pseudomonas pyrrocinia).;"
MarR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_103592_126
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121712..122548
DNA (837bp) protein (279aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia graminis C4D1M RepID=B1FUI0_9BURK
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EDT12290.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
berkeley_reactor_200306_biofilm_scaffold_103592_127
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122701..123630)
DNA (930bp) protein (310aa)
Drug/metabolite transporter DMT superfamily permease n=1 Tax=Bacillus atrophaeus UCMB-5137 RepID=R0PLS0_BACAT
Transporter {ECO:0000313|EMBL:KGM30275.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
permease
berkeley_reactor_200306_biofilm_scaffold_103592_128
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123734..125137
DNA (1404bp) protein (468aa)
Probable transcriptional regulator n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSQ1_9PROT
Probable transcriptional regulator {ECO:0000313|EMBL:EDP64304.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
transcriptional regulator/aminotransferase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_103592_129
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125157..126083)
DNA (927bp) protein (309aa)
Transcriptional regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q984Z5_RHILO
Transcriptional regulator {ECO:0000313|EMBL:KEA07804.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_103592_130
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126188..127534
DNA (1347bp) protein (449aa)
Nitrilotriacetate monooxygenase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IR9_RHILO
monooxygenase
Monooxygenase {ECO:0000313|EMBL:KEA07805.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_biofilm_scaffold_103592_131
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127559..128233)
DNA (675bp) protein (225aa)
NADP oxidoreductase n=1 Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI00035D9367
NADP oxidoreductase, coenzyme F420-dependent {ECO:0000313|EMBL:EYD78303.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
coenzyme F420-dependent NADP oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_103592_132
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

128627..130114
DNA (1488bp) protein (496aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UNK7_METS4
peptidase C14 caspase catalytic subunit p20
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ACA16115.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_103592_133
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130870..132567
DNA (1698bp) protein (566aa)
Peptidase C14 caspase catalytic subunit p20 n=2 Tax=Rhodopseudomonas palustris RepID=B3QH78_RHOPT
Peptidase C14, caspase catalytic subunit p20 {ECO:0000313|EMBL:ETR75015.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_103592_134
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132590..133018
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NVE1_GRAMM
Uncharacterized protein {ECO:0000313|EMBL:KGM35611.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_103592_135
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(133077..134090)
DNA (1014bp) protein (338aa)
Luciferase family oxidoreductase, group 1 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FDS4_CONWI
luciferase family oxidoreductase, group 1
Luciferase family oxidoreductase, group 1 {ECO:0000313|EMBL:ADB49648.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
berkeley_reactor_200306_biofilm_scaffold_103592_136
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(134153..135154)
DNA (1002bp) protein (334aa)
iolG; myo-inositol 2-dehydrogenase (EC:1.1.1.18)
Inositol 2-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01671, ECO:0000256|SAAS:SAAS00010088}; EC=1.1.1.18 {ECO:0000256|HAMAP-Rule:MF_01671, ECO:0000256|SAAS:SAAS00010088};; Myo-inositol 2-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01671}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
Inositol 2-dehydrogenase 2 n=2 Tax=Saccharopolyspora erythraea RepID=IOLG2_SACEN
berkeley_reactor_200306_biofilm_scaffold_103592_137
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135391..137514
DNA (2124bp) protein (708aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I8N3_9BRAD
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:ERF79860.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
flhA; export apparatus protein
berkeley_reactor_200306_biofilm_scaffold_103592_138
unknown

Not on your lists

137553..137960
DNA (408bp) protein (136aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_103592_139
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138033..138665
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003613E05
GCN5 family acetyltransferase {ECO:0000313|EMBL:KGE00619.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Thiosulfate sulfurtransferase
berkeley_reactor_200306_biofilm_scaffold_103592_140
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138673..139689)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318DA09
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ48123.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_103592_141
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139850..140803
DNA (954bp) protein (318aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ESR22675.1}; EC=2.6.1.42 {ECO:0000313|EMBL:ESR22675.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
Branched-chain amino acid aminotransferase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RHB7_9RHIZ
putative branched-chain amino acid aminotransferase
berkeley_reactor_200306_biofilm_scaffold_103592_142
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141042..141323
DNA (282bp) protein (94aa)
Plasmid maintenance system killer protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HTU2_AZOC5
plasmid maintenance system killer protein
Plasmid maintenance system killer protein {ECO:0000313|EMBL:BAF86870.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_103592_143
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141351..141650
DNA (300bp) protein (100aa)
addiction module antitoxin n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B64967
XRE family transcriptional regulator {ECO:0000313|EMBL:KIZ35330.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
XRE family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_103592_144
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141816..142604)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037FC5EB
Methyltransferase type 11 {ECO:0000313|EMBL:EFL50617.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
Methyltransferase type 11
berkeley_reactor_200306_biofilm_scaffold_103592_145
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142691..143107)
DNA (417bp) protein (139aa)
Plasmid stablization protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z0H8_9PROT
Plasmid stablization protein {ECO:0000313|EMBL:EME67785.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
Plasmid stabilization system protein
berkeley_reactor_200306_biofilm_scaffold_103592_146
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143055..143351)
DNA (297bp) protein (99aa)
Addiction module antidote protein, CC2985 family n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I8S9_RHOVT
addiction module antidote protein
Addiction module antidote protein, CC2985 family {ECO:0000313|EMBL:ADP72058.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
berkeley_reactor_200306_biofilm_scaffold_103592_147
unknown

Not on your lists

comp(143407..144318)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000379242A
berkeley_reactor_200306_biofilm_scaffold_103592_148
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144394..145110)
DNA (717bp) protein (239aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
rpiA; ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1ARR7_RHOOB
berkeley_reactor_200306_biofilm_scaffold_103592_149
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145137..145970)
DNA (834bp) protein (278aa)
Putative Phosphogluconate repressor HexR, RpiR family n=3 Tax=Vibrio nigripulchritudo RepID=U4E9D0_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:KGE05389.1}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
putative Phosphogluconate repressor HexR, RpiR family
berkeley_reactor_200306_biofilm_scaffold_103592_150
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145980..146627)
DNA (648bp) protein (216aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
gph; phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EAX0_9BURK
Displaying items 121-150 of 154 in total

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