ggKbase home page
This organism can only be binned in the context of its binning project GWB1. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

berkeley_reactor_200306_biofilm_scaffold_103592_129

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(125157..126083)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q984Z5_RHILO similarity UNIREF
DB: UNIREF100
  • Identity: 63.1
  • Coverage: 306.0
  • Bit_score: 383
  • Evalue 1.60e-103
Transcriptional regulator {ECO:0000313|EMBL:KEA07804.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.4
  • Coverage: 306.0
  • Bit_score: 392
  • Evalue 2.90e-106
transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 63.1
  • Coverage: 306.0
  • Bit_score: 383
  • Evalue 4.60e-104

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 927
ATGATCGGCGCTCCCTCCTTGCGTGGCCTGCAGGCGTTCGAGGCGGCCGCCCGCTCGGGAAGCTTCGTCGCCGCGGCCAGGGAGCTCGCGGTCTCGCCGGCGGCCGTCAGCCAGCTGATCCGCGCACTGGAGGATCAGGTCGGGCGCCGATTGTTCCATCGGGTCAACCGGCGCGTCGTCCTGACCGAGGCGGGCGCGGAAATCCTTCCCCAGATCGCCACCGCGTTCCGCGACCTCAGAGGCGTCTCGCGCGAGCTCGTCAGCGGCGAGCGGCGCTCGTCGCTGGTCGTGTCCGTGCCGCCCTCCCTCGCCGTGGACTGGCTTCCCCAGCGCCTTCCCGCCTTCGTCGACGCCCATGGCCCGGTCGACATTTCGCTGAGGGGCGAGGACGATCCGGTTCCCTTCGAGCGCGAGACCATCGACATCCGCTTCTCCTACGGACGCTTCTACGAGCGCGAGCACGAGACCGAGGAGCTGGCGACCGACGCCGTCCACCCCGTCTGCTCGCCCGCATGCCGGGTGCGGCACGGTCCGTTCGGCTCGCCGGACGACCTGCTGGCGGCACCGCTCATCCACACGGATTGGGGACCGTCCGGCGCCTCCTTCCCCTCCTGGCGCAACTGGTTCGAGGCGGCGGCGATCGCGCCGGGCCGCAGGATCCAGCGCGGCATGACCGCGAACTCCTCCAAGTCCGCCCTGGAGCTCGCCGTCGCGGGCCTCGGCGTCGCGCTCGGGCAGGGCATCTTCTGCGCCCGCGCCATCCGGGCCGGCACGCTCGTCGTCGCCGTCCCGCGGCCGCTTGCGCTCGGCCAGCCCTATTGCCTGACGGTGCCGGAGGGCAGCGCCCGGCGCGCCGTCGTCACGGCCTTCAGGCGCTGGCTGCGCGCCGAATGCCTCGATCTCATCGAGCCGCCAGCGCCGCCCTGA
PROTEIN sequence
Length: 309
MIGAPSLRGLQAFEAAARSGSFVAAARELAVSPAAVSQLIRALEDQVGRRLFHRVNRRVVLTEAGAEILPQIATAFRDLRGVSRELVSGERRSSLVVSVPPSLAVDWLPQRLPAFVDAHGPVDISLRGEDDPVPFERETIDIRFSYGRFYEREHETEELATDAVHPVCSPACRVRHGPFGSPDDLLAAPLIHTDWGPSGASFPSWRNWFEAAAIAPGRRIQRGMTANSSKSALELAVAGLGVALGQGIFCARAIRAGTLVVAVPRPLALGQPYCLTVPEGSARRAVVTAFRRWLRAECLDLIEPPAPP*