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berkeley_reactor_200306_biofilm_scaffold_154203_10

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(8160..9059)

Top 3 Functional Annotations

Value Algorithm Source
iolE; inosose dehydratase (EC:4.2.1.44) similarity KEGG
DB: KEGG
  • Identity: 79.5
  • Coverage: 297.0
  • Bit_score: 481
  • Evalue 1.60e-133
Xylose isomerase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FN90_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 299.0
  • Bit_score: 548
  • Evalue 2.20e-153
Xylose isomerase {ECO:0000313|EMBL:ESX80590.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.6
  • Coverage: 299.0
  • Bit_score: 548
  • Evalue 3.10e-153

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Taxonomy

Mesorhizobium sp. LSHC420B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 900
ATGAAAGCCAAACTCGGCATCGCGCCGATCGCCTGGTGGAACGATGACCTGGCGGAGCTGAGCGACGACGTCTCGCTCGAGGAATGCCTGCGGCAGGCCGGCGAGGCCGGCTTCACCGGCATGGAGACCGGCCGCCGCTTTCCCATGGACCCGGCCGTGCTGGGGCCGATCCTGAAGGCGCACGGCATCAGCGTCTGCGGCGGCTGGTTCTCCGGCCTGCTGCTCGACGGCGACATCGAGACGGAGAAGGCGCGCATCGCCGCCCAGATGCAGCTGTTCAAGGCCATGAATGCCCCGTGCATCGTCTATGGCGAGACGGCCGGAACCATCCAGGGCGACCGGTCGGCACCGCTCGCCACCAAGCGCAAGCTCTCCGAGGACGAGGTCAGGGCCTACGGCGCCAAGATGACCGCTTTCGCCGAATGGTGCGCCGGCGAGGGCATGCCCATCGCCTATCATCATCACATGGCCGCCCCGATCGAGACCGAAGAGGAGCTCGATCTCCTGATGCGCCATTCCGGCCCGGCCCTGCGGCTGCTCTACGACGCCGGCCACATGGCCTTCGCCGGCGGCGACGTGCTGCGGGTGATCGAGAAGCACCATGCCCGGATCAGCCATGTCCACACCAAGGACATCCGGCAGGCGGTGGTGGACGGGCTCGACCGCACCCGGGAGAGCTTCCTCGACGCCGTGGTCAAGGGCGCATTCACGGTGCCGGGCGACGGCTCGCTCGACTTCGTGGCCATCGTCCAGCGGCTGGCCTCCTACGGCTACGAGGGCTGGTTCGTGGTCGAGGCCGAACAGGATCCGGTAAAGAGCCCGCCGCTCGAGATGGCGAAGATCGGCCATAGGGAATTGCTGCGCGTCATGGCCGCGGCCGGCTATACCGTGGAGAACTGA
PROTEIN sequence
Length: 300
MKAKLGIAPIAWWNDDLAELSDDVSLEECLRQAGEAGFTGMETGRRFPMDPAVLGPILKAHGISVCGGWFSGLLLDGDIETEKARIAAQMQLFKAMNAPCIVYGETAGTIQGDRSAPLATKRKLSEDEVRAYGAKMTAFAEWCAGEGMPIAYHHHMAAPIETEEELDLLMRHSGPALRLLYDAGHMAFAGGDVLRVIEKHHARISHVHTKDIRQAVVDGLDRTRESFLDAVVKGAFTVPGDGSLDFVAIVQRLASYGYEGWFVVEAEQDPVKSPPLEMAKIGHRELLRVMAAAGYTVEN*