ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_154203

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_154203_1
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

165..2120
DNA (1956bp) protein (652aa)
chloride channel protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003641A3C
Chloride channel protein
Chloride channel protein {ECO:0000313|EMBL:CDN57344.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
berkeley_reactor_200306_biofilm_scaffold_154203_2
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2153..2761
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YG76_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09257.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_154203_3
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2798..3112
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YG76_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09257.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_154203_4
bacterium YEK0313, Bacteria

Not on your lists

comp(3365..4846)
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037D5600
Biofilm dispersion protein BdlA {ECO:0000313|EMBL:CEJ11831.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
berkeley_reactor_200306_biofilm_scaffold_154203_5
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5069..5497)
DNA (429bp) protein (143aa)
MarR family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI0003775BDC
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AEH86765.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
berkeley_reactor_200306_biofilm_scaffold_154203_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5661..6623
DNA (963bp) protein (321aa)
Non-heme chloroperoxidase (Chloride peroxidase) (CPO-P) (Chloroperoxidase P) {ECO:0000313|EMBL:CDX43439.1}; EC=1.11.1.10 {ECO:0000313|EMBL:CDX43439.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Caulobacter sp. AP07 RepID=J2GM62_9CAUL
non-heme chloroperoxidase
berkeley_reactor_200306_biofilm_scaffold_154203_7
unknown

Not on your lists

6620..6796
DNA (177bp) protein (59aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_154203_8
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6786..7118
DNA (333bp) protein (111aa)
Putative transcriptional regulator n=2 Tax=Rhodospirillum rubrum RepID=G2TCW5_RHORU
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ABC21696.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
berkeley_reactor_200306_biofilm_scaffold_154203_9
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7349..8158)
DNA (810bp) protein (270aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G0Y6_ACICJ
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABQ31518.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
berkeley_reactor_200306_biofilm_scaffold_154203_10
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8160..9059)
DNA (900bp) protein (300aa)
iolE; inosose dehydratase (EC:4.2.1.44)
Xylose isomerase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FN90_9RHIZ
Xylose isomerase {ECO:0000313|EMBL:ESX80590.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
berkeley_reactor_200306_biofilm_scaffold_154203_11
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9081..10922)
DNA (1842bp) protein (614aa)
UPI0003CEF5FA related cluster n=1 Tax=unknown RepID=UPI0003CEF5FA
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase {ECO:0000313|EMBL:ESW86248.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
thiamine pyrophosphate protein central region
berkeley_reactor_200306_biofilm_scaffold_154203_12
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11019..11969)
DNA (951bp) protein (317aa)
Transcriptional regulator, RpiR family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKC1_BEII9
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:ACB96402.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_154203_13
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12157..13593
DNA (1437bp) protein (479aa)
Aldehyde Dehydrogenase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKB9_BEII9
aldehyde dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ACB96400.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_154203_14
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13607..14467
DNA (861bp) protein (287aa)
HpcH/HpaI aldolase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKB8_BEII9
HpcH/HpaI aldolase
HpcH/HpaI aldolase {ECO:0000313|EMBL:ACB96399.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_154203_15
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14467..15456
DNA (990bp) protein (330aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKB7_BEII9
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ACB96398.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_154203_16
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15686..16681
DNA (996bp) protein (332aa)
inositol 2-dehydrogenase (EC:1.1.1.18)
Myo-inositol 2-dehydrogenase {ECO:0000313|EMBL:ABQ31523.1}; EC=1.1.1.18 {ECO:0000313|EMBL:ABQ31523.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Myo-inositol 2-dehydrogenase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G0Z1_ACICJ
berkeley_reactor_200306_biofilm_scaffold_154203_17
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16701..17822
DNA (1122bp) protein (374aa)
Oxidoreductase domain protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKB5_BEII9
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ACB96396.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_154203_18
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17852..17977
DNA (126bp) protein (42aa)
ABC-type sugar transport system, ATPase component (EC:3.6.3.17)
Putative sugar ABC transporter, ATP-binding protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TFD7_9BRAD
Putative sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CCE05175.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Displaying 18 items

View Taxonomy