ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_97220

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_97220_1
Crocosphaera watsonii, Crocosphaera, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3..302
DNA (300bp) protein (100aa)
Transposase n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C845_CROWT
Transposase {ECO:0000313|EMBL:EAM52426.1}; TaxID=165597 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Crocosphaera.;" source="Crocosphaera watsonii WH 8501.;"
DDE endonuclease
berkeley_reactor_200306_planktonic_scaffold_97220_2
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

299..631
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9UHM4_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGV16333.1}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
DDE endonuclease
berkeley_reactor_200306_planktonic_scaffold_97220_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(660..1097)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D6D9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24969.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1167..2414
DNA (1248bp) protein (416aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7Y4_SINAD
nucleotidyltransferase/DNA polymerase
Nucleotidyltransferase/DNA polymerase involved in DNA repair {ECO:0000313|EMBL:AGA24970.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_5
unknown

Not on your lists

comp(2375..3211)
DNA (837bp) protein (279aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_97220_6

Not on your lists

3225..4013
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4E45
Marine sediment metagenome DNA, contig: S01H1_L04904 {ECO:0000313|EMBL:GAF72798.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_97220_7
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(4077..4718)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000374D549
Dak phosphatase
Tax=RBG_13_Aminicenantes_62_12_curated
berkeley_reactor_200306_planktonic_scaffold_97220_8
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(4723..5727)
DNA (1005bp) protein (335aa)
Glycerone kinase (EC:2.7.1.29)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000363271D
Tax=RBG_13_Aminicenantes_62_12_curated
berkeley_reactor_200306_planktonic_scaffold_97220_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6367..7920)
DNA (1554bp) protein (518aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Thiamine-phosphate synthase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJY7_SINAD
thiamine-phosphate pyrophosphorylase
berkeley_reactor_200306_planktonic_scaffold_97220_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8279..8866
DNA (588bp) protein (196aa)
Glutathione peroxidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DI78_SINAD
glutathione peroxidase
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9082..11094)
DNA (2013bp) protein (671aa)
Membrane-fusion protein n=2 Tax=Singulisphaera acidiphila RepID=L0DJF5_SINAD
membrane-fusion protein
Membrane-fusion protein {ECO:0000313|EMBL:AGA28953.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11657..13312
DNA (1656bp) protein (552aa)
Matrixin n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHV3_SINAD
Matrixin
Matrixin {ECO:0000313|EMBL:AGA28954.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13422..14039
DNA (618bp) protein (206aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Superoxide dismutase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJD7_SINAD
superoxide dismutase
berkeley_reactor_200306_planktonic_scaffold_97220_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14275..14727
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJZ1_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28956.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14752..15459
DNA (708bp) protein (236aa)
23S RNA-specific pseudouridylate synthase n=2 Tax=Singulisphaera acidiphila RepID=L0DI82_SINAD
23S RNA-specific pseudouridylate synthase
23S RNA-specific pseudouridylate synthase {ECO:0000313|EMBL:AGA28957.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15494..15973)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJE1_SINAD
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(16336..17613)
DNA (1278bp) protein (426aa)
ABC-type antimicrobial peptide transport system, permease component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJZ6_SINAD
antimicrobial peptide ABC transporter permease
ABC-type antimicrobial peptide transport system, permease component {ECO:0000313|EMBL:AGA28961.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17725..18561)
DNA (837bp) protein (279aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DI85_SINAD
antimicrobial peptide ABC transporter ATPase
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AGA28962.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18558..20312)
DNA (1755bp) protein (585aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI000378B58B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28963.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(20320..23124)
DNA (2805bp) protein (935aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHW2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28964.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_21
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

23520..26135
DNA (2616bp) protein (872aa)
FG-GAP repeat protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJE5_SINAD
FG-GAP repeat-containing protein
FG-GAP repeat protein {ECO:0000313|EMBL:AGA28965.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_22
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

26295..26996
DNA (702bp) protein (234aa)
Regulatory protein Crp n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5STP9_PLAL2
regulatory protein Crp
Regulatory protein Crp {ECO:0000313|EMBL:ADG69078.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
berkeley_reactor_200306_planktonic_scaffold_97220_23
Mycobacterium rhodesiae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27326..27817
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium rhodesiae JS60 RepID=G4I2T2_MYCRH
Putative uncharacterized protein {ECO:0000313|EMBL:EHB53530.1}; TaxID=931627 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rhodesiae JS60.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_97220_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(27856..29538)
DNA (1683bp) protein (561aa)
Thiamine pyrophosphate dependent decarboxylase, pyruvate decarboxylase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK01_SINAD
thiamine pyrophosphate dependent decarboxylase, pyruvate decarboxylase
Thiamine pyrophosphate dependent decarboxylase, pyruvate decarboxylase {ECO:0000313|EMBL:AGA28966.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(29565..29930)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DI89_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28967.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_26
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(30074..31519)
DNA (1446bp) protein (482aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AE9_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ81973.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_97220_27
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(31579..34794)
DNA (3216bp) protein (1072aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029AFC32
Uncharacterized protein {ECO:0000313|EMBL:EDL59417.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_97220_28
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

35031..36215
DNA (1185bp) protein (395aa)
Neuraminidase (Sialidase)-like protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QZQ9_ISOPI
neuraminidase (sialidase)-like protein
Neuraminidase (Sialidase)-like protein {ECO:0000313|EMBL:ADV62195.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_97220_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(36232..37680)
DNA (1449bp) protein (483aa)
Threonine synthase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIA3_SINAD
threonine synthase
Threonine synthase {ECO:0000313|EMBL:AGA28987.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_97220_30
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

38172..38522
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI0002FE6FBA
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ADV61491.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
Displaying items 1-30 of 128 in total

View Taxonomy