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berkeley_reactor_200306_planktonic_scaffold_149613

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_149613_1
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

229..1587
DNA (1359bp) protein (453aa)
Transposase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67R97_SYMTH
transposase
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
berkeley_reactor_200306_planktonic_scaffold_149613_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1939..2325
DNA (387bp) protein (129aa)
Putative transcriptional regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D4Y5_SINAD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGA24494.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2322..4451
DNA (2130bp) protein (710aa)
Antirepressor regulating drug resistance protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D6N4_SINAD
antirepressor regulating drug resistance protein
Antirepressor regulating drug resistance protein {ECO:0000313|EMBL:AGA24493.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4652..5134
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGS8_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28467.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_5
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5115..6452)
DNA (1338bp) protein (446aa)
Glycosyltransferase KanE {ECO:0000313|EMBL:ETN93142.1}; EC=2.4.1.- {ECO:0000313|EMBL:ETN93142.1};; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
Glycosyl transferase group 1 n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28JF2_JANSC
glycosyl transferase, group 1
berkeley_reactor_200306_planktonic_scaffold_149613_6
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7489..9945
DNA (2457bp) protein (819aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ADB19171.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ADB19171.1};; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
putative two-component hybrid sensor and regulator n=1 Tax=Schlesneria paludicola RepID=UPI00029B3770
berkeley_reactor_200306_planktonic_scaffold_149613_7
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9932..11443)
DNA (1512bp) protein (504aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QZ20_ISOPI
Fis family two component sigma54 specific transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ADV63162.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_149613_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

12119..14845
DNA (2727bp) protein (909aa)
DNA/RNA helicase, superfamily II, SNF2 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJ80_SINAD
DNA/RNA helicase, superfamily II, SNF2 family {ECO:0000313|EMBL:AGA28890.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
DNA/RNA helicase
berkeley_reactor_200306_planktonic_scaffold_149613_9
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

14939..16249
DNA (1311bp) protein (437aa)
Putative dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8Y3_SINAD
dehydrogenase
Tax=RBG_13_Planctomycetes_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_149613_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16957..18072
DNA (1116bp) protein (372aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPL3_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA31187.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_11
unknown

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18099..18353
DNA (255bp) protein (85aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_149613_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

18399..20066
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQJ3_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31185.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_13
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(20362..20766)
DNA (405bp) protein (135aa)
Ferredoxin n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GLV0_9CYAN
Ferredoxin {ECO:0000313|EMBL:EKQ69928.1}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
ferredoxin-like protein
berkeley_reactor_200306_planktonic_scaffold_149613_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21151..21582)
DNA (432bp) protein (144aa)
hypothetical protein, partial n=1 Tax=Singulisphaera acidiphila RepID=UPI000366F38C
transposase family protein
Transposase family protein {ECO:0000313|EMBL:AGA25416.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

22215..23105
DNA (891bp) protein (297aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DLZ9_SINAD
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
berkeley_reactor_200306_planktonic_scaffold_149613_16
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(23118..25082)
DNA (1965bp) protein (655aa)
hypothetical protein, partial n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B7656B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCW34396.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
berkeley_reactor_200306_planktonic_scaffold_149613_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25760..26245)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEI9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27238.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(26494..29967)
DNA (3474bp) protein (1158aa)
WD40 repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DR60_SINAD
WD40 repeat-containing protein
WD40 repeat-containing protein {ECO:0000313|EMBL:AGA31513.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_19
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30116..30742
DNA (627bp) protein (209aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QXJ8_ISOPI
sigma-70 familyRNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ADV63046.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_149613_20
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31047..32126
DNA (1080bp) protein (360aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF78_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:ADV61544.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_149613_21
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

32292..32717
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R3H8_ISOPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV61545.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_149613_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

33250..35709
DNA (2460bp) protein (820aa)
Ig-like domain-containing protein n=2 Tax=Singulisphaera acidiphila RepID=L0DDD1_SINAD
Ig-like domain-containing protein
Ig-like domain-containing protein {ECO:0000313|EMBL:AGA27359.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

35819..37144
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D558_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18263.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_149613_24
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

37186..39345
DNA (2160bp) protein (720aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D557_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18262.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
pre-peptidase
berkeley_reactor_200306_planktonic_scaffold_149613_25
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

39556..40470
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFC3_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL56594.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
isochorismatase hydrolase
berkeley_reactor_200306_planktonic_scaffold_149613_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(40695..42611)
DNA (1917bp) protein (639aa)
Peroxiredoxin n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK15_SINAD
peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:AGA28981.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_149613_27
unknown

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comp(42862..43092)
DNA (231bp) protein (77aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_149613_28

Not on your lists

comp(43326..43751)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E874D9
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49389.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative nucleic acid-binding protein, contains PIN domain
berkeley_reactor_200306_planktonic_scaffold_149613_29
unknown

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comp(43748..43975)
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_149613_30
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(44156..45460)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI000299FE37
Uncharacterized protein {ECO:0000313|EMBL:EDY17227.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
Displaying items 1-30 of 35 in total

View Taxonomy