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berkeley_reactor_200306_planktonic_scaffold_14928

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_14928_1
GWF2_TM6_33_332, TM6, Bacteria

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2..508
DNA (507bp) protein (169aa)
putative regulator of cell autolysis id=2017000 bin=GWD2_Bacteroidetes_33_33 species=Myroides injenensis genus=Myroides taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:KKP52209.1}; TaxID=1619080 species="Bacteria; candidate division TM6.;" source="candidate division TM6 bacterium GW2011_GWF2_33_332.;"
putative signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_14928_2
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

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comp(573..1010)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003712A75
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
berkeley_reactor_200306_planktonic_scaffold_14928_3
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1151..1564)
DNA (414bp) protein (138aa)
Glyoxalase/Bleomycin resistance protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BIY7_ZUNPS
glyoxalase/Bleomycin resistance protein
Glyoxalase/Bleomycin resistance protein {ECO:0000313|EMBL:ADF53620.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_planktonic_scaffold_14928_4
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1616..2347)
DNA (732bp) protein (244aa)
Protein containing HTH domain n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BIY6_ZUNPS
hypothetical protein
Protein containing HTH domain {ECO:0000313|EMBL:ADF53619.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_planktonic_scaffold_14928_5
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

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comp(2585..3517)
DNA (933bp) protein (311aa)
CRO n=1 Tax=Flavobacterium sp. WG21 RepID=UPI000346F4DC
putative low-complexity protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
berkeley_reactor_200306_planktonic_scaffold_14928_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3812..4690)
DNA (879bp) protein (293aa)
Alpha/beta hydrolase fold protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLR1_CHIPD
alpha/beta hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACU60348.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_14928_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4786..5145
DNA (360bp) protein (120aa)
Transcriptional regulator, MerR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLR2_CHIPD
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACU60349.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_14928_8
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

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comp(5291..5626)
DNA (336bp) protein (112aa)
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
berkeley_reactor_200306_planktonic_scaffold_14928_9
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5934..6365)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEF1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM36245.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
HxlR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_14928_10
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6492..7286
DNA (795bp) protein (265aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:ADZ80971.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ADZ80971.1};; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CB68_SPHS2
3-oxoacyl-ACP reductase
berkeley_reactor_200306_planktonic_scaffold_14928_11
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7311..7634
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEE9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM36243.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_14928_12
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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7859..8164
DNA (306bp) protein (102aa)
Killing trait n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CCI2_9FLAO
Antirepresssor protein RebB {ECO:0000313|EMBL:KFF28698.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
RebB like protein
berkeley_reactor_200306_planktonic_scaffold_14928_13
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(8646..9812)
DNA (1167bp) protein (389aa)
Uncharacterized protein {ECO:0000313|EMBL:KIA95637.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
berkeley_reactor_200306_planktonic_scaffold_14928_14
unknown

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comp(9919..10050)
DNA (132bp) protein (44aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_14928_15
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(10078..10278)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:GAF05886.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
berkeley_reactor_200306_planktonic_scaffold_14928_16
unknown

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comp(10324..10527)
DNA (204bp) protein (68aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_14928_17
unknown

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comp(10938..11072)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 17 items

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