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cn_combo_scaffold_293

Alias: PHE30_9

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Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_293_1
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96..953)
DNA (858bp) protein (286aa)
Alpha/beta hydrolase fold n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9N2_CAUSK
alpha/beta hydrolase
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABZ74431.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp.
cn_combo_scaffold_293_2
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1123..1548)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI000372341B
Thioesterase {ECO:0000313|EMBL:KJS25741.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
hypothetical protein
cn_combo_scaffold_293_3
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2181..2825
DNA (645bp) protein (215aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Caulobacter crescentus OR37 RepID=R0EAM3_CAUCE
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:ENZ82533.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteracea
RND efflux system outer membrane lipoprotein
cn_combo_scaffold_293_4
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2862..3719
DNA (858bp) protein (286aa)
Gifsy-2 prophage protein n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K966_9RHOB
protein of unknown function DUF159 Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
hypothetical protein
cn_combo_scaffold_293_5
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4772..6211)
DNA (1440bp) protein (480aa)
UPI0003CF3AA3 related cluster n=1 Tax=unknown RepID=UPI0003CF3AA3
Uncharacterized protein {ECO:0000313|EMBL:ESY84232.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
Phage integrase
cn_combo_scaffold_293_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6653..7483)
DNA (831bp) protein (277aa)
Chloride peroxidase {ECO:0000313|EMBL:BAK67528.1}; EC=1.11.1.10 {ECO:0000313|EMBL:BAK67528.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae
Chloride peroxidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKX6_9SPHN
chloride peroxidase rbh
cn_combo_scaffold_293_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7524..8360)
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKX7_9SPHN
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67529.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingo
cn_combo_scaffold_293_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8502..8969
DNA (468bp) protein (156aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKX8_9SPHN
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:BAK67530.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
cn_combo_scaffold_293_9
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9194..9712)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630840
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
cn_combo_scaffold_293_10
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9926..11743
DNA (1818bp) protein (606aa)
dnaX; DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
DNA polymerase III subunits gamma and tau n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDT3_PHEZH
dnaX; DNA polymerase III subunits gamma and tau
cn_combo_scaffold_293_11
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11881..12207
DNA (327bp) protein (109aa)
Nucleoid-associated protein PHZ_c0369 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=Y369_PHEZH
hypothetical protein; K09747 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_293_12
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12210..12812
DNA (603bp) protein (201aa)
Recombination protein RecR n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RECR_PHEZH
recR; recombination protein RecR
Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenyl
cn_combo_scaffold_293_13
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12867..14105
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDT7_PHEZH
hypothetical protein; K09760 DNA recombination protein RmuC Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_293_14
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14205..14711
DNA (507bp) protein (169aa)
Peptide deformylase {ECO:0000255|HAMAP-Rule:MF_00163}; Short=PDF {ECO:0000255|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000255|HAMAP-Rule:MF_00163};; Polypeptide deformylase {ECO:0000255|HAMAP-Rule:MF_
Peptide deformylase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=DEF_PHEZH
polypeptide deformylase
cn_combo_scaffold_293_15
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14759..15067)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Neisseria flavescens NRL30031/H210 RepID=C0EN64_NEIFL
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_293_16
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15156..16094
DNA (939bp) protein (313aa)
fmt; methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Methionyl-tRNA formyltransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=FMT_PHEZH
fmt; methionyl-tRNA formyltransferase
cn_combo_scaffold_293_17
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16094..16831
DNA (738bp) protein (246aa)
truA; tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
tRNA pseudouridine synthase A n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDU3_PHEZH
truA; tRNA pseudouridine synthase A rbh
cn_combo_scaffold_293_18
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16873..17901
DNA (1029bp) protein (343aa)
Beta-lactamase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRC2_PARL1
Beta-lactamase {ECO:0000313|EMBL:KCZ83310.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.
beta-lactamase
cn_combo_scaffold_293_19
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17953..18786
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB86_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:AJR23723.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
hypothetical protein
cn_combo_scaffold_293_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18833..19954)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F38565
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66745.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingo
cn_combo_scaffold_293_21
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20097..21239)
DNA (1143bp) protein (381aa)
dapE; succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Succinyl-diaminopimelate desuccinylase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=DAPE_PHEZH
dapE; succinyl-diaminopimelate desuccinylase rbh
cn_combo_scaffold_293_22
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21282..21740
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDU5_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG76794.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
cn_combo_scaffold_293_23
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21784..22614)
DNA (831bp) protein (277aa)
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_6
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDU9_PHEZH
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase rbh
cn_combo_scaffold_293_24
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22614..23276)
DNA (663bp) protein (221aa)
Hydrolase, haloacid dehalogenase-like family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDV0_PHEZH
hydrolase, haloacid dehalogenase-like family; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hydrolase, haloacid dehalogenase-like family
cn_combo_scaffold_293_25
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23273..24187)
DNA (915bp) protein (305aa)
argB; acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Acetylglutamate kinase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDV1_PHEZH
argB; acetylglutamate kinase
cn_combo_scaffold_293_26
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24278..25033)
DNA (756bp) protein (252aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T045_CAUSK
CRP/FNR family transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
CRP/FNR family transcriptional regulator
cn_combo_scaffold_293_27
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25134..26276)
DNA (1143bp) protein (381aa)
Long-chain acyl-CoA dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDV3_PHEZH
long-chain acyl-CoA dehydrogenase
Long-chain acyl-CoA dehydrogenase {ECO:0000313|EMBL:ACG76802.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phe
cn_combo_scaffold_293_28
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26330..26986)
DNA (657bp) protein (219aa)
Probable GTP-binding protein EngB n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDV4_PHEZH
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
engB; ribosome biogenesis GTP-binding protein YsxC
cn_combo_scaffold_293_29
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26983..28782)
DNA (1800bp) protein (600aa)
Membrane protein insertase YidC n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=YIDC_PHEZH
inner membrane protein translocase component YidC; K03217 preprotein translocase subunit YidC Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
inner membrane protein translocase component YidC
cn_combo_scaffold_293_30
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28779..29198)
DNA (420bp) protein (140aa)
Ribonuclease P protein component n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDV6_PHEZH
rnpA; ribonuclease P protein component
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rul
Displaying items 1-30 of 107 in total

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