ggKbase home page

cn_combo_scaffold_280

Alias: PHE30_11

Search features with annotation key words

Displaying items 1-30 of 181 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_280_1
unknown

Not on your lists

comp(101..268)
DNA (168bp) protein (56aa)

This feature has no annotations

cn_combo_scaffold_280_2
unknown

Not on your lists

comp(338..709)
DNA (372bp) protein (124aa)

This feature has no annotations

cn_combo_scaffold_280_3
unknown

Not on your lists

comp(922..2322)
DNA (1401bp) protein (467aa)

This feature has no annotations

cn_combo_scaffold_280_4
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2486..2896
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCU0_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG78277.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
cn_combo_scaffold_280_5
unknown

Not on your lists

comp(2815..3624)
DNA (810bp) protein (270aa)

This feature has no annotations

cn_combo_scaffold_280_6
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3898..6198
DNA (2301bp) protein (767aa)
parC; DNA topoisomerase IV subunit A; K02621 topoisomerase IV subunit A [EC:5.99.1.-] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
DNA topoisomerase 4 subunit A n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCT9_PHEZH
parC; DNA topoisomerase IV subunit A
cn_combo_scaffold_280_7
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6226..7158)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8N667_RALSL
cyclic nucleotide-binding domain protein
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:AIO43962.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia c
cn_combo_scaffold_280_8
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7172..7987)
DNA (816bp) protein (272aa)
Uncharacterized protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=Q9A4X4_CAUCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK24666.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresce
cn_combo_scaffold_280_9
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7977..9494)
DNA (1518bp) protein (506aa)
Two-component response regulator n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H120_CAUCN
two-component response regulator rbh
Uncharacterized protein {ECO:0000313|EMBL:AAK24665.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresce
cn_combo_scaffold_280_10
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9988..10731)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI000371C2FD
Uncharacterized protein {ECO:0000313|EMBL:ETR78907.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
short-chain dehydrogenase/reductase SDR
cn_combo_scaffold_280_11
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11022..11975)
DNA (954bp) protein (318aa)
Transcriptional regulator, LuxR family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RK99_ACCPU
LuxR family transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
LuxR family transcriptional regulator
cn_combo_scaffold_280_12
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12195..12725
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631649
Uncharacterized protein {ECO:0000313|EMBL:GAO38771.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
cn_combo_scaffold_280_13
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12756..13211)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Citricoccus sp. CH26A RepID=UPI000255EE17
Uncharacterized protein {ECO:0000313|EMBL:KHL00088.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
Putative membrane associated protein
cn_combo_scaffold_280_14
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13325..13714)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWD4_BREDI
Uncharacterized protein {ECO:0000313|EMBL:KDP94259.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas s
hypothetical protein
cn_combo_scaffold_280_15
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13769..14683)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00030BEE64
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_280_16
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14821..15168)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDT2_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG76781.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
cn_combo_scaffold_280_17
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15301..16326)
DNA (1026bp) protein (342aa)
Sensor histidine kinase, putative n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G4X2_9RHIZ
signal transduction histidine kinase Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
sensor histidine kinase
cn_combo_scaffold_280_18
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16392..17429)
DNA (1038bp) protein (346aa)
epimerase, partial n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000374D4A6
Epimerase {ECO:0000313|EMBL:AKC88029.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonens
hypothetical protein
cn_combo_scaffold_280_19
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17693..18436
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036A84DC
PEP-CTERM motif protein {ECO:0000313|EMBL:EXI65388.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
cn_combo_scaffold_280_20
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18583..19077
DNA (495bp) protein (165aa)
coaD; phosphopantetheine adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Phosphopantetheine adenylyltransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9P7_PHEZH
coaD; phosphopantetheine adenylyltransferase
cn_combo_scaffold_280_21
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19112..20149
DNA (1038bp) protein (346aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase [EC:5.2.1.8] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9P8_PHEZH
cyclophilin type peptidyl-prolyl cis-trans isomerase
cn_combo_scaffold_280_22
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20149..20610
DNA (462bp) protein (154aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales;
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9P9_PHEZH
cyclophilin type peptidyl-prolyl cis-trans isomerase
cn_combo_scaffold_280_23
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20740..21741)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9Q2_PHEZH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_280_24
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21784..22863
DNA (1080bp) protein (360aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=QUEA_PHEZH
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase
cn_combo_scaffold_280_25
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22860..23996
DNA (1137bp) protein (379aa)
tgt; queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Queuine tRNA-ribosyltransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9Q4_PHEZH
tgt; queuine tRNA-ribosyltransferase rbh
cn_combo_scaffold_280_26
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23929..24663)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9Q5_PHEZH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_280_trna_1
unknown

Not on your lists

24794..24865
DNA (72bp)
transferRNA
cn_combo_scaffold_280_27
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25508..27511
DNA (2004bp) protein (668aa)
TonB-denpendent receptor n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B31476
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
TonB-dependent receptor
cn_combo_scaffold_280_28
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27625..28389
DNA (765bp) protein (255aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein id=12496183 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
periplasmic binding protein
cn_combo_scaffold_280_29
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28386..29387
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376A02B
transport system permease protein; K02015 iron complex transport system permease protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
ABC transporter permease
Displaying items 1-30 of 181 in total

View Taxonomy