ggKbase home page

cn_combo_scaffold_401

Alias: PHE30_14

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_401_1
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

292..621
DNA (330bp) protein (110aa)
Predicted transcriptional regulator n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB07_PHEZH
transcriptional regulator; K10947 PadR family transcriptional regulator, regulatory protein PadR Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
transcriptional regulator
cn_combo_scaffold_401_2
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

618..1199
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB08_PHEZH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_401_3
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1210..2061
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB09_PHEZH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_401_4
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2086..2607)
DNA (522bp) protein (174aa)
methionine sulfoxide reductase B; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Methionine sulfoxide reductase B n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB10_PHEZH
methionine sulfoxide reductase B
cn_combo_scaffold_401_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2680..3117)
DNA (438bp) protein (146aa)
Sortase-like acyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUX5_9RHIZ
Sortase-like acyltransferase {ECO:0000313|EMBL:EIM27767.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" sour
N-acetyltransferase GCN5
cn_combo_scaffold_401_6
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3114..4091)
DNA (978bp) protein (326aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase; K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RB11_PHEZH
argC; N-acetyl-gamma-glutamyl-phosphate reductase
cn_combo_scaffold_401_7
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4234..5253)
DNA (1020bp) protein (340aa)
Nitronate monooxygenase n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2ENS5_9BURK
Nitronate monooxygenase {ECO:0000313|EMBL:ELA01255.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HM
nitronate monooxygenase family protein rbh
cn_combo_scaffold_401_8
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5411..7288)
DNA (1878bp) protein (626aa)
Putative monooxygenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCQ6_PHEZH
monooxygenase Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
monooxygenase
cn_combo_scaffold_401_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7470..8717)
DNA (1248bp) protein (416aa)
Transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J2HFQ2_9CAUL
Transcriptional regulator {ECO:0000313|EMBL:EJL34448.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp.
TetR family transcriptional regulator
cn_combo_scaffold_401_10
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8918..11089
DNA (2172bp) protein (724aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8P4_SPHWW
TonB-dependent receptor Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
TonB-dependent receptor
cn_combo_scaffold_401_11
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11116..11319
DNA (204bp) protein (68aa)
Ferredoxin n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WIU5_MYCKA
ferredoxin
Uncharacterized protein {ECO:0000313|EMBL:EUA09212.1}; TaxID=1299326 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii 662.;"
cn_combo_scaffold_401_12
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11316..12575
DNA (1260bp) protein (420aa)
Ferredoxin reductase n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JIV8_STREN
ferredoxin reductase
Ferredoxin reductase {ECO:0000313|EMBL:AEW98957.1}; NAD(FAD)-dependent dehydrogenase {ECO:0000313|EMBL:CCB71997.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae
cn_combo_scaffold_401_13
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12572..13786
DNA (1215bp) protein (405aa)
Cytochrome P450 n=1 Tax=Streptomyces davawensis JCM 4913 RepID=K4R119_9ACTO
cytochrome P450
Cytochrome P450 {ECO:0000313|EMBL:CCK26344.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
cn_combo_scaffold_401_14
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13794..14930)
DNA (1137bp) protein (379aa)
Sulfonate transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H9F7_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44563.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
thiolase
cn_combo_scaffold_401_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14927..15334)
DNA (408bp) protein (136aa)
FdhD protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HNT8_9BRAD
FdhD protein {ECO:0000313|EMBL:ERF86478.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
cn_combo_scaffold_401_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15406..16947
DNA (1542bp) protein (514aa)
lcfB4; long-chain-fatty-acid--CoA ligase LcfB (EC:6.2.1.3)
Non-specific protein-tyrosine kinase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IR50_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44562.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
cn_combo_scaffold_401_17
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16944..17735
DNA (792bp) protein (264aa)
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HPW1_9BRAD
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:ERF86481.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source
short-chain dehydrogenase/reductase SDR rbh
cn_combo_scaffold_401_18
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17744..18526
DNA (783bp) protein (261aa)
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44560.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KIU44560.1};; TaxID=29448 species="Bacteria; Proteobacteri
caiD1; carnitinyl-CoA dehydratase CaiD (EC:4.2.1.-)
Enoyl-CoA hydratase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H9G3_9BRAD
cn_combo_scaffold_401_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18527..19162)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IUA6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ETR78918.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
TetR family transcriptional regulator
cn_combo_scaffold_401_20
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19244..20479)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQI3_TISMK
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFK55021.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis
cn_combo_scaffold_401_21
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20597..21079)
DNA (483bp) protein (161aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R942_PHEZH
translation initiation inhibitor
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:ACG77712.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobac
cn_combo_scaffold_401_22
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21254..22216)
DNA (963bp) protein (321aa)
Fe2+-dicitrate sensor, membrane component n=1 Tax=Caulobacter sp. AP07 RepID=J3AS73_9CAUL
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:EJL36319.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source=
hypothetical protein
cn_combo_scaffold_401_23
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22189..22761)
DNA (573bp) protein (191aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Caulobacter sp. AP07 RepID=J2HKQ3_9CAUL
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL36318.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" sour
ECF subfamily RNA polymerase sigma-24 subunit
cn_combo_scaffold_401_24
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23094..23975)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4PQG8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ87750.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis b
LysR family transcriptional regulator
cn_combo_scaffold_401_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24072..25580
DNA (1509bp) protein (503aa)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RP07_ASTEC
methylmalonate-semialdehyde dehydrogenase
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AJP70670.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sour
cn_combo_scaffold_401_26
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25752..26114
DNA (363bp) protein (121aa)
CopY family transcriptional regulator id=2826707 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KFN48549.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae
putative transcriptional regulator
cn_combo_scaffold_401_27
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26111..27304
DNA (1194bp) protein (398aa)
Transcriptional regulator n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H5P3_CAUCN
MecR1 antirepressor protein
Uncharacterized protein {ECO:0000313|EMBL:AAK25470.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresce
cn_combo_scaffold_401_28
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27288..28115)
DNA (828bp) protein (276aa)
N-hydroxyarylamine O-acetyltransferase; K00675 N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
N-hydroxyarylamine O-acetyltransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCU2_PHEZH
N-hydroxyarylamine O-acetyltransferase
cn_combo_scaffold_401_29
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28179..29117)
DNA (939bp) protein (313aa)
GTPase Era n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCU3_PHEZH
era; GTP-binding protein Era; K03595 GTP-binding protein Era Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
era; GTP-binding protein Era rbh
cn_combo_scaffold_401_30
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29114..29812)
DNA (699bp) protein (233aa)
ribonuclease III; K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Ribonuclease 3 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RNC_PHEZH
ribonuclease III
Displaying items 1-30 of 89 in total

View Taxonomy