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cn_combo_scaffold_175

Alias: RUB134_9

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Displaying items 1-30 of 209 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_175_1
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142..864
DNA (723bp) protein (241aa)
ATPase n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YCS4_THIV6
ATPase
ATPase {ECO:0000313|EMBL:AFL74792.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 /
cn_combo_scaffold_175_2
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

864..4082
DNA (3219bp) protein (1073aa)
type I site-specific deoxyribonuclease, HsdR family; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z5G5_DESAT
type I site-specific deoxyribonuclease, HsdR family
cn_combo_scaffold_175_3
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4072..4872
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z5G6_DESAT
Uncharacterized protein {ECO:0000313|EMBL:EXI89878.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
hypothetical protein
cn_combo_scaffold_175_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4904..5899)
DNA (996bp) protein (332aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LQ2_RHOP5
NAD-dependent epimerase/dehydratase
cn_combo_scaffold_175_5
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5902..7653)
DNA (1752bp) protein (584aa)
Thiamine pyrophosphate TPP-binding domain-containing protein n=1 Tax=Leptonema illini DSM 21528 RepID=H2CBI0_9LEPT
thiamine pyrophosphate TPP-binding domain-containing protein
Thiamine pyrophosphate TPP-binding domain-containing protein {ECO:0000313|EMBL:BAO29875.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfurit
cn_combo_scaffold_175_6
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7757..10246
DNA (2490bp) protein (830aa)
RNA-binding S1 domain-containing protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HS02_RUBGI
RNA-binding S1 domain-containing protein {ECO:0000313|EMBL:BAL95789.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosu
RNA-binding S1 domain-containing protein
cn_combo_scaffold_175_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10455..12365
DNA (1911bp) protein (637aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
thrS; threonyl-tRNA synthetase ThrS (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNX3_9BURK
cn_combo_scaffold_175_8
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12450..12989
DNA (540bp) protein (180aa)
Translation initiation factor IF-3 n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HS07_RUBGI
infC; translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;"
cn_combo_scaffold_175_9
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13124..13327
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPZ2_9BURK
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="R
rpmI; 50S ribosomal protein L35 RpmI
cn_combo_scaffold_175_10
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13358..13714
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HS09_RUBGI
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="R
cn_combo_scaffold_175_11
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13810..14871
DNA (1062bp) protein (354aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
pheS; phenylalanyl-tRNA synthetase alpha chain PheS (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HS10_RUBGI
cn_combo_scaffold_175_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14909..17332
DNA (2424bp) protein (808aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
pheT; phenylalanyl-tRNA synthetase beta chain PheT (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HS11_RUBGI
cn_combo_scaffold_175_13
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17363..17728
DNA (366bp) protein (122aa)
Integration host factor subunit alpha n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HS12_RUBGI
ihfA; integration host factor subunit alpha IhfA
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|SAAS:SAAS00062113}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=983917 species="Bacteria; Proteobacter
cn_combo_scaffold_175_14
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17763..18206
DNA (444bp) protein (148aa)
Regulatory protein merr n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPY7_9BURK
Regulatory protein merr {ECO:0000313|EMBL:EGJ10405.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
MerR family transcriptional regulator
cn_combo_scaffold_175_trna_1
unknown

Not on your lists

18277..18350
DNA (74bp)
transferRNA
cn_combo_scaffold_175_15
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18510..19829)
DNA (1320bp) protein (440aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H6W8_9PROT
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:EKV32809.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;"
TRAP dicarboxylate transporter, DctM subunit
cn_combo_scaffold_175_16
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19888..20418)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GRM6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AKH20118.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
hypothetical protein
cn_combo_scaffold_175_17
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20415..21443)
DNA (1029bp) protein (343aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HLV8_9PROT
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:EKV31333.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;"
TRAP dicarboxylate transporter, DctP subunit
cn_combo_scaffold_175_18
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21933..23096)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUA4_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96591.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_175_19
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23199..24860
DNA (1662bp) protein (554aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" so
nadB; L-aspartate oxidase NadB (EC:1.4.3.16)
L-aspartate oxidase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LW39_9BURK
cn_combo_scaffold_175_20
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24884..25174)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HU96_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96583.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_175_21
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25275..26387)
DNA (1113bp) protein (371aa)
nadA; quinolinate synthetase NadA (EC:2.5.1.72)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" s
quinolinate synthetase n=1 Tax=Caldimonas manganoxidans RepID=UPI0003609C97
cn_combo_scaffold_175_22
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26489..27319)
DNA (831bp) protein (277aa)
Transcriptional regulator, AraC family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W219_ACISJ
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABM40294.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
cn_combo_scaffold_175_23
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27391..28620
DNA (1230bp) protein (410aa)
Sugar phosphate permease n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WID2_9BURK
Sugar phosphate permease {ECO:0000313|EMBL:EHR71345.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
major facilitator superfamily transporter
cn_combo_scaffold_175_24
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28620..30350
DNA (1731bp) protein (577aa)
putative acetolactate synthase large subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK47_9BURK
putative acetolactate synthase large subunit
cn_combo_scaffold_175_25
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30371..31294)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LW47_9BURK
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:BAL96577.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain
cn_combo_scaffold_175_26
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31305..32000
DNA (696bp) protein (232aa)
4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993}; Short=HMG aldolase {ECO:0000256|RuleBase:RU004338};; EC=4.1.1.3 {ECO:0000256|RuleBase:RU00433
Ribonuclease activity regulator protein RraA n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LW49_9BURK
ribonuclease activity regulator protein RraA
cn_combo_scaffold_175_27
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32017..32571
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HU87_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96574.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_175_trna_2
unknown

Not on your lists

32606..32679
DNA (74bp)
transferRNA
cn_combo_scaffold_175_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33029..34492
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C215E
Hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:GAD20825.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acido
hypothetical protein
Displaying items 1-30 of 209 in total

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