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cn_combo_scaffold_984

Alias: RUB134_22

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Displaying items 31-53 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_984_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24423..24803)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003714732
Pyridoxamine 5''-phosphate oxidase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Pyridoxamine 5''-phosphate oxidase
cn_combo_scaffold_984_31
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24931..26055)
DNA (1125bp) protein (375aa)
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LKC0_9BURK
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:EGJ08788.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatil
putative dioxygenase (alpha subunit), oxidoreductase protein
cn_combo_scaffold_984_32
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26269..26502
DNA (234bp) protein (78aa)
xseB; exodeoxyribonuclease 7 small subunit XseB (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclea
Exodeoxyribonuclease 7 small subunit n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPS1_RUBGI
cn_combo_scaffold_984_33
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26499..27404
DNA (906bp) protein (302aa)
geranyltranstransferase (EC:2.5.1.10)
Geranylgeranyl pyrophosphate synthase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WT74_9BURK
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:EHR73610.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.
cn_combo_scaffold_984_34
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27406..29298
DNA (1893bp) protein (631aa)
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPS3_RUBGI
cn_combo_scaffold_984_35
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29378..30169
DNA (792bp) protein (264aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivi
GTP cyclohydrolase FolE2 n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPS4_RUBGI
hypothetical protein
cn_combo_scaffold_984_36
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30216..31265)
DNA (1050bp) protein (350aa)
hypothetical protein; K07001 NTE family protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Patatin id=1270951 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
predicted esterase of the alpha-beta hydrolase superfamily
cn_combo_scaffold_984_37
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31295..32446)
DNA (1152bp) protein (384aa)
lldD; L-lactate dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] Tax=GWA2_Curvibacter_64_110_curated
lldA; L-lactate dehydrogenase LldA (EC:1.1.2.3)
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WL25_9BURK
cn_combo_scaffold_984_38
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32574..32966
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B68557
hypothetical protein
Inner membrane protein YbaN {ECO:0000313|EMBL:EWS62198.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
cn_combo_scaffold_984_39
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32979..34193)
DNA (1215bp) protein (405aa)
dinP; DNA-directed DNA polymerase DinP (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=987059 species="Bacteria; Proteobacteria; Bet
DNA polymerase IV n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUX9_9BURK
cn_combo_scaffold_984_40
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34296..34619
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XYI9_LEPCP
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hypothetical protein
cn_combo_scaffold_984_41
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34620..36023)
DNA (1404bp) protein (468aa)
argH; argininosuccinate lyase ArgH (EC:4.3.2.1)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:S
Argininosuccinate lyase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVF3_RUBGI
cn_combo_scaffold_984_42
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36097..37221
DNA (1125bp) protein (375aa)
algZ; two-component system sensor protein, alginate biosynthesis (EC:2.7.3.-)
Two-component system sensor protein, alginate biosynthesis {ECO:0000313|EMBL:BAL96989.1}; EC=2.7.3.- {ECO:0000313|EMBL:BAL96989.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria;
Two-component system sensor protein, alginate biosynthesis n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVF2_RUBGI
cn_combo_scaffold_984_43
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37218..37970
DNA (753bp) protein (251aa)
LytR/AlgR family transcriptional regulator n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUY2_9BURK
LytR/AlgR family transcriptional regulator {ECO:0000313|EMBL:EGJ12150.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoati
algR; LytTR family two component transcriptional regulator
cn_combo_scaffold_984_44
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40119..40409)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholder
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4I3_LEPCP
CRISPR-associated Cas2 family protein
cn_combo_scaffold_984_45
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40431..41459)
DNA (1029bp) protein (343aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
CRISPR-associated endonuclease Cas1 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4I4_LEPCP
CRISPR-associated Cas1 family protein rbh
cn_combo_scaffold_984_46
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41462..42100)
DNA (639bp) protein (213aa)
CRISPR-associated protein Cas4 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4I5_LEPCP
CRISPR-associated Cas4 family protein
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:ACB33424.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain AT
cn_combo_scaffold_984_47

Not on your lists

comp(42111..42470)
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=mine drainage metagenome RepID=T1BHR0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD52639.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
cn_combo_scaffold_984_48
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42490..42741)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00037D4AD6
Uncharacterized protein {ECO:0000313|EMBL:AKH38883.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas comm
hypothetical protein
cn_combo_scaffold_984_49
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42744..43742)
DNA (999bp) protein (333aa)
CRISPR-associated protein, Csd2 family protein n=1 Tax=mine drainage metagenome RepID=E6PND3_9ZZZZ
uncharacterized protein predicted to be involved in DNA repair
Uncharacterized protein predicted to be involved in DNA repair {ECO:0000313|EMBL:BAO81242.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" so
cn_combo_scaffold_984_50
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43745..45541)
DNA (1797bp) protein (599aa)
CRISPR-associated protein, Csd1 family n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYZ7_HALNC
CRISPR-associated protein Csd1 family
CRISPR-associated protein, Csd1 family {ECO:0000313|EMBL:ACX95670.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source
cn_combo_scaffold_984_51

Not on your lists

comp(45538..46215)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PND1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH96433.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CRISPR-associated protein Cas5 family
cn_combo_scaffold_984_52
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46239..48587)
DNA (2349bp) protein (783aa)
CRISPR-associated helicase Cas3 n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W4A5_9BURK
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:EGF30315.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacteri
CRISPR-associated helicase Cas3
Displaying items 31-53 of 53 in total

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