ggKbase home page

cn_combo_scaffold_1460

Alias: RUB134_25

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1460_1
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70..405
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RNI4_ALLVD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC63349.1}; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosu
cn_combo_scaffold_1460_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(449..1081)
DNA (633bp) protein (211aa)
UPI0003D3FB56 related cluster n=1 Tax=unknown RepID=UPI0003D3FB56
Predicted transcriptional regulator {ECO:0000313|EMBL:GAD24104.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovora
hypothetical protein
cn_combo_scaffold_1460_3
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1184..2338
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Ralstonia solanacearum (strain Po82) RepID=F6G8J2_RALS8
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEG71082.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacear
cn_combo_scaffold_1460_4
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2361..2609)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Ralstonia solanacearum CFBP2957 RepID=D8P3A9_RALSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBJ53395.1}; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearu
cn_combo_scaffold_1460_5
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3440..4447
DNA (1008bp) protein (336aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR05_9BURK
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EGJ10773.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus
NAD-dependent epimerase/dehydratase family protein
cn_combo_scaffold_1460_6
unknown

Not on your lists

comp(4569..5294)
DNA (726bp) protein (242aa)

This feature has no annotations

cn_combo_scaffold_1460_7
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5522..6307)
DNA (786bp) protein (262aa)
peptidase S1B family protein (EC:3.4.21.-) Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
peptidase S1B family protein (EC:3.4.21.-)
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Rubrivivax gelatinosus S1 RepID=L8BA53_RUBGE
cn_combo_scaffold_1460_8
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6719..8104
DNA (1386bp) protein (462aa)
Sugar transferase, PEP-CTERM system associated n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HL65_RUBGI
sugar transferase
Sugar transferase, PEP-CTERM system associated {ECO:0000313|EMBL:BAL93752.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gela
cn_combo_scaffold_1460_9
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8176..10398
DNA (2223bp) protein (741aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1138313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" sour
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Rubrivivax gelatinosus S1 RepID=L8B9Y5_RUBGE
multi-sensor signal transduction histidine kinase rbh
cn_combo_scaffold_1460_10
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10395..11798
DNA (1404bp) protein (468aa)
Fis family two component sigma-54 specific transcriptional regulator n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR15_9BURK
two component Fis family sigma54-specific transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
two component Fis family sigma54-specific transcriptional regulator
cn_combo_scaffold_1460_11
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11852..14635
DNA (2784bp) protein (928aa)
Putative Tetratricopeptide TPR_2 n=1 Tax=Rubrivivax gelatinosus S1 RepID=L8BAQ4_RUBGE
Putative Tetratricopeptide TPR_2 {ECO:0000313|EMBL:CCF78675.1}; TaxID=1138313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus S1.;"
hypothetical protein
cn_combo_scaffold_1460_12
unknown

Not on your lists

14836..15621
DNA (786bp) protein (262aa)

This feature has no annotations

cn_combo_scaffold_1460_13
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15917..16129
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WZV3_DELAC
AbrB family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EPD38312.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
cn_combo_scaffold_1460_14

Not on your lists

16129..16518
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QGQ5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI06419.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PilT protein domain-containing protein
cn_combo_scaffold_1460_15
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16703..17116
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI00036C0B00
putative DNA-binding protein Tax=CG_Rhodof_03
DNA-binding protein
cn_combo_scaffold_1460_16
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17116..18381
DNA (1266bp) protein (422aa)
HipA domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1] Tax=CG_Rhodof_03
HipA domain protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KSP5_9BURK
HipA domain-containing protein
cn_combo_scaffold_1460_17
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18499..19338
DNA (840bp) protein (280aa)
ABC-type antimicrobial peptide transporter ATPase; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
ABC transporter, ATP-binding protein n=1 Tax=Rubrivivax gelatinosus S1 RepID=L8BAQ8_RUBGE
ABC transporter family protein
cn_combo_scaffold_1460_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19343..20758
DNA (1416bp) protein (472aa)
Efflux ABC transporter permease n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN21_9BURK
Efflux ABC transporter permease {ECO:0000313|EMBL:EGJ09739.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2
hypothetical protein
cn_combo_scaffold_1460_19
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20758..21546
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus S1 RepID=L8BA60_RUBGE
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
hypothetical protein
cn_combo_scaffold_1460_20
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21551..22843
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN23_9BURK
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
hypothetical protein
cn_combo_scaffold_1460_21
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22875..24128)
DNA (1254bp) protein (418aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41) rbh
3-oxoacyl-[acyl-carrier-protein] synthase II {ECO:0000313|EMBL:BAL95067.1}; EC=2.3.1.41 {ECO:0000313|EMBL:BAL95067.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
3-oxoacyl-[acyl-carrier-protein] synthase II n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPY0_RUBGI
cn_combo_scaffold_1460_22
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24133..24402)
DNA (270bp) protein (90aa)
phosphopantetheine-binding protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034D8BD9
acyl carrier protein
Acyl carrier protein {ECO:0000313|EMBL:BAL95068.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10024
cn_combo_scaffold_1460_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24389..25522)
DNA (1134bp) protein (378aa)
alpha/beta hydrolase, partial n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B61A60
alpha/beta hydrolase
Alpha/beta hydrolase fold {ECO:0000313|EMBL:BAL95069.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC
cn_combo_scaffold_1460_24
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25824..26492
DNA (669bp) protein (223aa)
Polysaccharide export protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN17_9BURK
Polysaccharide export protein {ECO:0000313|EMBL:EGJ09735.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 =
putative polysaccharide export outer membrane protein
cn_combo_scaffold_1460_25
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26532..28118
DNA (1587bp) protein (529aa)
Lipopolysaccharide biosynthesis n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN16_9BURK
Lipopolysaccharide biosynthesis {ECO:0000313|EMBL:EGJ09734.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2
polysaccharide chain length determinant protein
cn_combo_scaffold_1460_26
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28123..29085
DNA (963bp) protein (321aa)
Non-specific protein-tyrosine kinase n=1 Tax=Rubrivivax gelatinosus S1 RepID=L8BAR0_RUBGE
protein-tyrosine kinase
Non-specific protein-tyrosine kinase {ECO:0000313|EMBL:CCF78690.1}; TaxID=1138313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus S
cn_combo_scaffold_1460_27
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29098..30627
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q220Z1_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD68412.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rho
cn_combo_scaffold_1460_28
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30632..31744
DNA (1113bp) protein (371aa)
Putative nucleoside-triphosphatase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HL70_RUBGI
putative nucleoside-triphosphatase
Putative nucleoside-triphosphatase {ECO:0000313|EMBL:BAL93757.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (str
cn_combo_scaffold_1460_29
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31780..32904
DNA (1125bp) protein (375aa)
wecB; UDP-N-acetylglucosamine 2-epimerase WecB (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN12_9BURK
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EGJ09730.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus
cn_combo_scaffold_1460_30
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32927..33871
DNA (945bp) protein (315aa)
Polysaccharide deactylase family protein, PEP-CTERM locus subfamily n=1 Tax=Rubrivivax gelatinosus S1 RepID=L8BAG8_RUBGE
Polysaccharide deactylase family protein, PEP-CTERM locus subfamily {ECO:0000313|EMBL:CCF78694.1}; TaxID=1138313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" s
putative hydrolase
Displaying items 1-30 of 34 in total

View Taxonomy