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cn_combo_scaffold_2126

Alias: RUB134_28

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2126_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(269..679)
DNA (411bp) protein (137aa)
hypothetical protein id=5079883 bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
cn_combo_scaffold_2126_2
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(762..2036)
DNA (1275bp) protein (425aa)
Putative M16B family peptidase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HK31_RUBGI
peptidase M16 domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
putative M16B family peptidase
cn_combo_scaffold_2126_3
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2126..3493
DNA (1368bp) protein (456aa)
argG; argininosuccinate synthase ArgG (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009500}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase
Argininosuccinate synthase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HND0_RUBGI
cn_combo_scaffold_2126_4
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3509..4552)
DNA (1044bp) protein (348aa)
L-asparaginase II n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTK1_9BURK
L-asparaginase II {ECO:0000313|EMBL:EGJ11669.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35
L-asparaginase, thermolabile family protein
cn_combo_scaffold_2126_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4639..5361
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I4V7_9BURK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
cn_combo_scaffold_2126_6
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5410..5850)
DNA (441bp) protein (147aa)
Universal stress protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLK4_METPP
Universal stress protein family protein {ECO:0000313|EMBL:EWS59474.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-
universal stress protein
cn_combo_scaffold_2126_7
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5987..6784)
DNA (798bp) protein (266aa)
Putative transferase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LTK6_9BURK
Putative transferase {ECO:0000313|EMBL:EGJ11674.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA
peptidase C26 family protein
cn_combo_scaffold_2126_8
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6913..8583
DNA (1671bp) protein (557aa)
Na/Pi-cotransporter n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WP19_9BURK
Na/Pi-cotransporter {ECO:0000313|EMBL:EHR73227.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001
Na/Pi-cotransporter II-like protein
cn_combo_scaffold_2126_9
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8673..10364
DNA (1692bp) protein (564aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=987059 spe
fhs; formate-tetrahydrofolate ligase Fhs (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LM33_9BURK
cn_combo_scaffold_2126_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10431..11897
DNA (1467bp) protein (489aa)
PAS sensor protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000361FBA4
FOG: PAS/PAC domain {ECO:0000313|EMBL:GAD20633.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
diguanylate cyclase
cn_combo_scaffold_2126_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12154..12741
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000372504F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAD24259.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
cn_combo_scaffold_2126_12
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12856..13785)
DNA (930bp) protein (310aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:00002
argF; ornithine carbamoyltransferase ArgF (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM41_9BURK
cn_combo_scaffold_2126_13
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13782..14996)
DNA (1215bp) protein (405aa)
argD; acetylornithine aminotransferase ArgD (EC:2.6.1.11)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=983917 species="Bacteria; Prot
Acetylornithine aminotransferase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNT7_RUBGI
cn_combo_scaffold_2126_14
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15249..15572
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM39_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR71924.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
cn_combo_scaffold_2126_15
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15671..15976)
DNA (306bp) protein (102aa)
30S ribosomal protein S20 n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM38_9BURK
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium
rpsT; 30S ribosomal protein S20
cn_combo_scaffold_2126_16
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16133..17692
DNA (1560bp) protein (520aa)
Integral membrane protein MviN n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR31_9BURK
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus J
mviN; integral membrane protein MviN
cn_combo_scaffold_2126_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17869..18537
DNA (669bp) protein (223aa)
DnaA-homolog protein Hda n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNU2_RUBGI
hda; DnaA-like protein Hda
DnaA-homolog protein Hda {ECO:0000313|EMBL:BAL94679.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 1
cn_combo_scaffold_2126_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18596..19264
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR28_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ10796.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
putative phosphatase
cn_combo_scaffold_2126_19
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19261..20958
DNA (1698bp) protein (566aa)
pcnB; poly(A) polymerase PcnB (EC:2.7.7.19)
Poly(A) polymerase (Fragment) n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR27_9BURK
Poly(A) polymerase {ECO:0000313|EMBL:EGJ10795.1}; Flags: Fragment;; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticu
cn_combo_scaffold_2126_20
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21172..21819
DNA (648bp) protein (216aa)
Phosphate transport regulator related to PhoU n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM29_9BURK
Phosphate transport regulator related to PhoU {ECO:0000313|EMBL:EHR71914.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JO
hypothetical protein
cn_combo_scaffold_2126_21
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21856..22866
DNA (1011bp) protein (337aa)
Phosphate transporter n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN28_9BURK
Phosphate transporter {ECO:0000313|EMBL:EGJ09746.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BA
pit; putative low-affinity inorganic phosphate transporter Pit
cn_combo_scaffold_2126_22
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22879..23310)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNU9_RUBGI
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hypothetical protein
cn_combo_scaffold_2126_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23562..23810
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNV1_RUBGI
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain N
cn_combo_scaffold_2126_24
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23833..24489
DNA (657bp) protein (219aa)
Ribosome maturation factor RimM n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN31_9BURK
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" sou
rimM; 16S rRNA processing protein RimM
cn_combo_scaffold_2126_25
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24504..25256
DNA (753bp) protein (251aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM24_9BURK
trmD; tRNA (guanine-N1-)-methyltransferase TrmD
cn_combo_scaffold_2126_26
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25333..25686
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=1 Tax=Ideonella sp. B508-1 RepID=UPI000346EFB6
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source=
cn_combo_scaffold_2126_27
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26013..26714
DNA (702bp) protein (234aa)
NTP pyrophosphohydrolase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM22_9BURK
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EHR71907.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
NUDIX hydrolase
cn_combo_scaffold_2126_28
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26772..27761
DNA (990bp) protein (330aa)
cbiB; cobalamin biosynthesis protein CbiB (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNV6_RUBGI
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus
cn_combo_scaffold_2126_29
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27773..28591)
DNA (819bp) protein (273aa)
rsgA; putative ribosome biogenesis GTPase RsgA (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNV7_RUBGI
cn_combo_scaffold_2126_30
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28764..30071)
DNA (1308bp) protein (436aa)
putative M48A family peptidase; K06013 STE24 endopeptidase [EC:3.4.24.84] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
Ste24 endopeptidase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN37_9BURK
putative M48A family peptidase
Displaying items 1-30 of 41 in total

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