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scnpilot_dereplicated_Sphingomonadales_1

scnpilot-dereplicated_Sphingomonadales_62_1
In projects: scnpilot-dereplicated  |  SCNpilot_P_inoc  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Auto curated genome
Original version: SCNpilot_P_inoc_Novosphingobium_63_5

Properties

Avg. coverage: 1.00 Longest contig: 100.13 Kbp Bin length: 3.51 Mbp GC content: 62.35 %
Contigs count: 210 Features count: 3436 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Displaying items 101-150 of 210 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_12110_curated
Genus: Novosphingobium (60%)
5 3893 bp 63.32 1.00 90.93
scnpilot_p_inoc_scaffold_5432_curated
Genus: Novosphingobium (60%)
10 7080 bp 64.79 1.00 90.93
scnpilot_p_inoc_scaffold_6432_curated
Order: Sphingomonadales (63.64%)
11 11265 bp 63.52 1.00 90.92
scnpilot_p_inoc_scaffold_1142_curated
Order: Sphingomonadales (81.48%)
27 26633 bp 62.04 1.00 90.74
scnpilot_p_inoc_scaffold_5362_curated
Species: Altererythrobacter atlanticus (66.67%)
6 7210 bp 61.93 1.00 90.71
scnpilot_p_inoc_scaffold_909_curated
Order: Sphingomonadales (81.82%)
22 35230 bp 60.43 1.00 90.66
scnpilot_p_inoc_scaffold_1208_curated
Genus: Novosphingobium (65.12%)
44 44537 bp 64.34 1.00 90.55
scnpilot_p_inoc_scaffold_1414_curated
Order: Sphingomonadales (76.47%)
17 21225 bp 62.35 1.00 90.54
scnpilot_p_inoc_scaffold_1219_curated
Species: Altererythrobacter atlanticus (62.5%)
24 24823 bp 62.13 1.00 90.53
scnpilot_p_inoc_scaffold_1641_curated
Order: Sphingomonadales (94.12%)
17 18053 bp 62.17 1.00 90.50
scnpilot_p_inoc_scaffold_967_curated
Order: Sphingomonadales (100%)
25 33087 bp 62.18 1.00 90.46
scnpilot_p_inoc_scaffold_735_curated
Order: Sphingomonadales (86.15%)
65 64829 bp 61.75 1.00 90.44
scnpilot_p_inoc_scaffold_1321_curated
Species: Altererythrobacter atlanticus (70.59%)
17 22883 bp 62.69 1.00 90.37
scnpilot_p_inoc_scaffold_1269_curated
Order: Sphingomonadales (85.71%)
21 23805 bp 59.65 1.00 90.33
scnpilot_p_inoc_scaffold_2011_curated
Genus: Sphingobium (50%)
14 15081 bp 60.47 1.00 90.05
scnpilot_p_inoc_scaffold_3628_curated
Order: Sphingomonadales (100%)
12 12972 bp 64.46 1.00 89.94
scnpilot_p_inoc_scaffold_1430_curated
Order: Sphingomonadales (64.52%)
63 48373 bp 62.75 1.00 89.94
scnpilot_p_inoc_scaffold_1007_curated
Order: Sphingomonadales (92.31%)
54 58097 bp 61.83 1.00 89.93
scnpilot_p_inoc_scaffold_680_curated
Order: Sphingomonadales (79.07%)
43 56324 bp 61.35 1.00 89.91
scnpilot_p_inoc_scaffold_1626_curated
Order: Sphingomonadales (89.47%)
20 18249 bp 64.49 1.00 89.89
scnpilot_p_inoc_scaffold_3351_curated
Genus: Novosphingobium (53.33%)
15 9978 bp 65.30 1.00 89.72
scnpilot_p_inoc_scaffold_1777_curated
Order: Sphingomonadales (93.33%)
15 16657 bp 63.28 1.00 89.67
scnpilot_p_inoc_scaffold_5570_curated
Order: Sphingomonadales (90%)
10 8649 bp 64.53 1.00 89.66
scnpilot_p_inoc_scaffold_4259_curated
Order: Sphingomonadales (71.43%)
7 8422 bp 62.68 1.00 89.62
scnpilot_p_inoc_scaffold_7168_curated
Order: Sphingomonadales (57.14%)
7 5922 bp 62.88 1.00 89.56
scnpilot_p_inoc_scaffold_2901_curated
Species: Altererythrobacter atlanticus (60%)
11 11057 bp 63.18 1.00 89.56
scnpilot_p_inoc_scaffold_1655_curated
Order: Sphingomonadales (92.31%)
39 29591 bp 62.73 1.00 89.52
scnpilot_p_inoc_scaffold_2136_curated
Order: Sphingomonadales (100%)
18 14206 bp 62.57 1.00 89.52
scnpilot_p_inoc_scaffold_10185_curated
Species: Altererythrobacter atlanticus (80%)
5 4479 bp 61.71 1.00 89.48
scnpilot_p_inoc_scaffold_1207_curated
Order: Sphingomonadales (95.83%)
49 44924 bp 62.48 1.00 89.42
scnpilot_p_inoc_scaffold_8814_curated
Species: Altererythrobacter atlanticus (66.67%)
6 4860 bp 61.52 1.00 89.38
scnpilot_p_inoc_scaffold_847_curated
Order: Sphingomonadales (72.73%)
33 39547 bp 62.44 1.00 89.38
scnpilot_p_inoc_scaffold_6898_curated
Species: Altererythrobacter atlanticus (75%)
4 6022 bp 64.13 1.00 89.37
scnpilot_p_inoc_scaffold_844_curated
Order: Sphingomonadales (88.89%)
100 100134 bp 63.14 1.00 89.35
scnpilot_p_inoc_scaffold_2845_curated
Order: Sphingomonadales (88.89%)
9 11218 bp 62.63 1.00 89.27
scnpilot_p_inoc_scaffold_8861_curated
Order: Sphingomonadales (83.33%)
6 5047 bp 62.53 1.00 89.22
scnpilot_p_inoc_scaffold_12949_curated
Species: Novosphingobium tardaugens (71.43%)
7 5652 bp 63.39 1.00 88.96
scnpilot_p_inoc_scaffold_926_curated
Order: Sphingomonadales (77.14%)
35 34104 bp 61.45 1.00 88.92
scnpilot_p_inoc_scaffold_860_curated
Order: Sphingomonadales (88.89%)
45 54752 bp 62.12 1.00 88.88
scnpilot_p_inoc_scaffold_5979_curated
Order: Sphingomonadales (83.33%)
6 6648 bp 59.13 1.00 88.67
scnpilot_p_inoc_scaffold_2626_curated
Order: Sphingomonadales (91.3%)
23 11967 bp 60.88 1.00 88.67
scnpilot_p_inoc_scaffold_790_curated
Order: Sphingomonadales (93.33%)
45 42354 bp 61.41 1.00 88.65
scnpilot_p_inoc_scaffold_3352_curated
Genus: Novosphingobium (58.33%)
12 9975 bp 62.44 1.00 88.63
scnpilot_p_inoc_scaffold_6303_curated
Class: Alphaproteobacteria (66.67%)
3 6431 bp 59.99 1.00 88.59
scnpilot_p_inoc_scaffold_10761_curated
Order: Sphingomonadales (72.73%)
11 7421 bp 61.74 1.00 88.57
scnpilot_p_inoc_scaffold_3223_curated
Order: Sphingomonadales (77.78%)
18 13395 bp 62.58 1.00 88.44
scnpilot_p_inoc_scaffold_890_curated
Class: Alphaproteobacteria (62.22%)
46 36186 bp 59.85 1.00 88.35
scnpilot_p_inoc_scaffold_4770_curated
Genus: Novosphingobium (50%)
12 7844 bp 63.41 1.00 88.27
scnpilot_p_inoc_scaffold_4284_curated
Genus: Novosphingobium (72.73%)
12 8420 bp 62.95 1.00 88.22
scnpilot_p_inoc_scaffold_4723_curated
Genus: Novosphingobium (50%)
11 7876 bp 62.98 1.00 88.07
Displaying items 101-150 of 210 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.