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SCN18_10_11_15_R4_P_scaffold_523

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_P_scaffold_523_1
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(174..2075)
DNA (1902bp) protein (634aa)
30S ribosomal protein S1 n=1 Tax=Segetibacter koreensis RepID=UPI00035FE542
RNA binding S1 domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_2
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2259..2600
DNA (342bp) protein (114aa)
SCN18_10_11_15_R4_P_scaffold_523_3
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2657..3805)
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000363977E
hypothetical protein
HI0933 family protein {ECO:0000313|EMBL:AEW00917.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_10_11_15_R4_P_scaffold_523_4
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3870..4670)
DNA (801bp) protein (267aa)
Methionine aminopeptidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMD6_NIAKG
methionine aminopeptidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_5
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(4755..6089)
DNA (1335bp) protein (445aa)
preprotein translocase subunit SecY n=1 Tax=Segetibacter koreensis RepID=UPI00036612BC
protein translocase subunit secY/sec61 alpha
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_6
SCNpilot_P_inoc_Niastella_39_19, SCNpilot_P_inoc_Niastella_39_19, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6178..6660)
DNA (483bp) protein (161aa)
50S ribosomal protein L15 n=1 Tax=Segetibacter koreensis RepID=UPI00037717C3
50S ribosomal protein L15
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_7
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6760..6942)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU89_CHIPD
50S ribosomal protein L30
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_8
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6960..7481)
DNA (522bp) protein (174aa)
30S ribosomal protein S5 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TME0_NIAKG
30S ribosomal protein S5
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_9
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(7511..7861)
DNA (351bp) protein (117aa)
50S ribosomal protein L18 n=1 Tax=Segetibacter koreensis RepID=UPI000369F1AF
50S ribosomal protein L18
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_10
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(7910..8464)
DNA (555bp) protein (185aa)
50S ribosomal protein L6 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TME2_NIAKG
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
50S ribosomal protein L6
SCN18_10_11_15_R4_P_scaffold_523_11
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(8556..8954)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNU6_9SPHI
30S ribosomal protein S8
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_12
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(9001..9270)
DNA (270bp) protein (90aa)
30S ribosomal protein S14 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TME4_NIAKG
30S ribosomal protein S14
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_13
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(9342..9917)
DNA (576bp) protein (192aa)
50S ribosomal protein L5 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TME5_NIAKG
50S ribosomal protein L5
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_14
SCNpilot_P_inoc_Niastella_39_19, SCNpilot_P_inoc_Niastella_39_19, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(9917..10255)
DNA (339bp) protein (113aa)
50S ribosomal protein L24 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU82_CHIPD
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
50S ribosomal protein L24
SCN18_10_11_15_R4_P_scaffold_523_15
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(10369..10737)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TME7_NIAKG
50S ribosomal protein L14
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_16
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(10861..11121)
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TME8_NIAKG
30S ribosomal protein S17
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_17
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(11138..11350)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037DC18F
50S ribosomal protein L29
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_18
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(11366..11785)
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMF0_NIAKG
50S ribosomal protein L16
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_19
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(11869..12681)
DNA (813bp) protein (271aa)
30S ribosomal protein S3 n=1 Tax=Segetibacter koreensis RepID=UPI0003745FB9
30S ribosomal protein S3
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_20
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(12695..13039)
DNA (345bp) protein (115aa)
50S ribosomal protein L22 n=1 Tax=Segetibacter koreensis RepID=UPI00037C82F8
50S ribosomal protein L22
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_21
SCNpilot_BF_INOC_Sphingobacteriales_46_9, SCNpilot_BF_INOC_Sphingobacteriales_46_9, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(13124..13393)
DNA (270bp) protein (90aa)
30S ribosomal protein S19 n=1 Tax=Segetibacter koreensis RepID=UPI00036B4717
30S ribosomal protein S19
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_22
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(13445..14284)
DNA (840bp) protein (280aa)
50S ribosomal protein L2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMF4_NIAKG
50S ribosomal protein L2
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_23
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(14330..14629)
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Segetibacter koreensis RepID=UPI00037C2AA7
50S ribosomal protein L23
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_24
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(14656..15294)
DNA (639bp) protein (213aa)
50S ribosomal protein L4 n=1 Tax=Segetibacter koreensis RepID=UPI0003719F00
50S ribosomal protein L4
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_25
SCNpilot_BF_INOC_Sphingobacteriales_46_9, SCNpilot_BF_INOC_Sphingobacteriales_46_9, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(15317..15904)
DNA (588bp) protein (196aa)
50S ribosomal protein L3 n=1 Tax=Segetibacter koreensis RepID=UPI00035E574B
50S ribosomal protein L3
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_26
SCNpilot_BF_INOC_Sphingobacteriales_46_9, SCNpilot_BF_INOC_Sphingobacteriales_46_9, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(16160..16465)
DNA (306bp) protein (102aa)
30S ribosomal protein S10 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNT0_9SPHI
30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCN18_10_11_15_R4_P_scaffold_523_27
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16731..19187
DNA (2457bp) protein (819aa)
O-antigen polymerase n=1 Tax=uncultured Flavobacteriia bacterium RepID=H6REP2_9BACT
O-antigen polymerase {ECO:0000313|EMBL:CCF99503.1}; TaxID=212695 species="Bacteria; Bacteroidetes; Flavobacteriia; environmental samples.;" source="uncultured Flavobacteriia bacterium.;"
O-antigen polymerase
SCN18_10_11_15_R4_P_scaffold_523_28
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19268..21418)
DNA (2151bp) protein (717aa)
Elongation factor G n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNM0_NIAKG
translation elongation factor 2 (EF-2/EF-G)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_10_11_15_R4_P_scaffold_523_29
SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, SCNPILOT_EXPT_750_BF_Sphingobacteriia_47_330, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21602..22303)
DNA (702bp) protein (234aa)
Outer membrane protein MIP id=4209253 bin=GWC2_Bacteroidetes_40_22 species=unknown genus=unknown taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Marine sediment metagenome DNA, contig: S12H4_C01196 {ECO:0000313|EMBL:GAI72450.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidylprolyl isomerase, FKBP-type
SCN18_10_11_15_R4_P_scaffold_523_30
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22412..25114)
DNA (2703bp) protein (901aa)
Putative uncharacterized protein id=4209263 bin=GWC2_Bacteroidetes_40_22 species=Dictyostelium discoideum genus=Dictyostelium taxon_order=Dictyosteliida taxon_class=unknown phylum=unknown tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Uncharacterized protein {ECO:0000313|EMBL:CDP24287.1}; TaxID=515849 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Lasiosphaeriaceae; Podospora.;" source="Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383); (Pleurage anserina).;"
hemagluttinin family protein
Displaying 30 items

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