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SCN18_30_10_14_R1_B_scaffold_4198

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_4198_1
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..166
DNA (165bp) protein (55aa)
Asparagine synthase (Glutamine-hydrolysing) {ECO:0000313|EMBL:BAK67211.1}; EC=6.3.5.4 {ECO:0000313|EMBL:BAK67211.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Asparagine synthetase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ41_9SPHN
asnB; asparagine synthase
SCN18_30_10_14_R1_B_scaffold_4198_2
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(191..601)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ40_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67210.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4198_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(698..1438)
DNA (741bp) protein (247aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA pseudouridine synthase A n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ39_9SPHN
truA; tRNA pseudouridine synthase A
SCN18_30_10_14_R1_B_scaffold_4198_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1435..2328)
DNA (894bp) protein (298aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Methionyl-tRNA formyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ38_9SPHN
fmt; methionyl-tRNA formyltransferase
SCN18_30_10_14_R1_B_scaffold_4198_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2410..3000
DNA (591bp) protein (197aa)
Recombination protein RecR n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ37_9SPHN
recR; recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4198_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3023..4084)
DNA (1062bp) protein (354aa)
L-glyceraldehyde 3-phosphate reductase {ECO:0000313|EMBL:AKH43371.1}; EC=1.1.1.- {ECO:0000313|EMBL:AKH43371.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INN2_9SPHN
putative oxidoreductase
SCN18_30_10_14_R1_B_scaffold_4198_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4323..4853
DNA (531bp) protein (177aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Peptide deformylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ33_9SPHN
def; peptide deformylase
SCN18_30_10_14_R1_B_scaffold_4198_8
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4927..5841)
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FKY9_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCV13554.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
transcriptional regulator, LysR family
SCN18_30_10_14_R1_B_scaffold_4198_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6065..6559
DNA (495bp) protein (165aa)
UPI0003CE8295 related cluster n=1 Tax=unknown RepID=UPI0003CE8295
Cupin {ECO:0000313|EMBL:ESY66607.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_4198_10
SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, Gammaproteobacteria

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comp(6581..6946)
DNA (366bp) protein (122aa)
Glyoxalase family protein n=4 Tax=Coxiella burnetii RepID=A9KCU8_COXBN
glyoxalase family protein
Glyoxalase family protein {ECO:0000313|EMBL:ABS78313.1}; TaxID=434922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella.;" source="Coxiella burnetii (strain Dugway 5J108-111).;"
SCN18_30_10_14_R1_B_scaffold_4198_11
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7112..8398)
DNA (1287bp) protein (429aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Citrate synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ31_9SPHN
gltA; citrate (Si)-synthase
SCN18_30_10_14_R1_B_scaffold_4198_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8447..9199)
DNA (753bp) protein (251aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutamate--tRNA ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ30_9SPHN
gltX; glutamyl-tRNA synthetase
SCN18_30_10_14_R1_B_scaffold_4198_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9207..9806
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVG1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03453.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCN18_30_10_14_R1_B_scaffold_4198_14
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9787..11928
DNA (2142bp) protein (714aa)
ComEC/Rec2-related protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ29_9SPHN
ComEC/Rec2-like protein
ComEC/Rec2-related protein {ECO:0000313|EMBL:BAK67199.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 14 items

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