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SCN18_25_1_16_R2_B_scaffold_152

Search features with annotation key words

Displaying items 1-30 of 218 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R2_B_scaffold_152_1
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..194)
DNA (192bp) protein (64aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
Propionyl-CoA carboxylase {ECO:0000313|EMBL:ABE62922.1}; EC=6.4.1.3 {ECO:0000313|EMBL:ABE62922.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Propionyl-CoA carboxylase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH5_NITHX
SCN18_25_1_16_R2_B_scaffold_152_2
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(378..683)
DNA (306bp) protein (102aa)
ETC complex I subunit conserved region protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1J6_9BRAD
ETC complex I subunit conserved region protein {ECO:0000313|EMBL:EAQ33892.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ETC complex I subunit region
SCN18_25_1_16_R2_B_scaffold_152_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1058..2236
DNA (1179bp) protein (393aa)
Putative OpgC protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q213V4_RHOPB
putative OpgC protein
Putative OpgC protein {ECO:0000313|EMBL:ABD88332.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_25_1_16_R2_B_scaffold_152_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2262..4073)
DNA (1812bp) protein (604aa)
Carbamoyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH3_NITHX
carbamoyltransferase
Carbamoyltransferase {ECO:0000313|EMBL:ABE62924.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_5
unknown

Not on your lists

4238..4345
DNA (108bp) protein (36aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_152_6
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4562..4852
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62925.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_7
unknown

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5039..5224
DNA (186bp) protein (62aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_152_trna_4
unknown

Not on your lists

comp(5292..5365)
DNA (74bp)
transferRNA Pro
SCN18_25_1_16_R2_B_scaffold_152_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5427..5915)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLG0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62937.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_9
SCNPILOT_SOLID2_TRIM150_Phage_6, SCNPILOT_SOLID2_TRIM150_Phage_6, SCNPILOT_SOLID2_TRIM150_Phage_6, SCNPILOT_SOLID2_TRIM150_Phage_6, SCNPILOT_SOLID2_TRIM150_Phage_6, Phage

Not on your lists

comp(6122..6787)
DNA (666bp) protein (222aa)
Cold-shock DNA-binding protein family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF9_NITHX
cold-shock DNA-binding domain-containing protein
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABE62938.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6984..7745)
DNA (762bp) protein (254aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
NAD-dependent deacetylase n=1 Tax=Afipia birgiae RepID=UPI00030D327F
NAD-dependent deacetylase
SCN18_25_1_16_R2_B_scaffold_152_11
unknown

Not on your lists

8116..8310
DNA (195bp) protein (65aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_152_12
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8431..8730)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62940.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9314..9763
DNA (450bp) protein (150aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF6_NITHX
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABE62941.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_14
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9730..9978
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YU65_BRASO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL77441.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCN18_25_1_16_R2_B_scaffold_152_15
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10298..10939
DNA (642bp) protein (214aa)
glutathione S-transferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037B269B
Bradyrhizobium elkanii strain UASWS1015 Contig178, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48037.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
glutathione S-transferase
SCN18_25_1_16_R2_B_scaffold_152_16
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10963..11214)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X212_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ33725.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_152_trna_1
unknown

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11515..11586
DNA (72bp)
transferRNA Glu
SCN18_25_1_16_R2_B_scaffold_152_17
unknown

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comp(11673..11834)
DNA (162bp) protein (54aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_152_18
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12165..12365)
DNA (201bp) protein (67aa)
Cold-shock DNA-binding protein family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF4_NITHX
cold-shock DNA-binding domain-containing protein
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABE62943.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_19
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

Not on your lists

comp(12365..13438)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62944.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_20
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13441..13971)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF2_NITHX
hypothetical protein
Tax=BJP_08E140C01_Roseovarius_63_250
SCN18_25_1_16_R2_B_scaffold_152_21
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

Not on your lists

comp(13973..14668)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF1_NITHX
peptidase U35, phage prohead HK97
Uncharacterized protein {ECO:0000313|EMBL:ABE62946.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_22
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

Not on your lists

comp(14668..15927)
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Ponticaulis koreensis RepID=UPI0003B77487
Uncharacterized protein {ECO:0000313|EMBL:KGB81966.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
phage major capsid protein, HK97 family
SCN18_25_1_16_R2_B_scaffold_152_23
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

Not on your lists

comp(16250..17764)
DNA (1515bp) protein (505aa)
Phage terminase-like protein large subunit n=1 Tax=Sulfitobacter sp. EE-36 RepID=A3S7B4_9RHOB
Phage terminase {ECO:0000313|EMBL:KDA03071.1}; TaxID=1280953 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas oceanitis SCH89.;"
Phage terminase-like protein large subunit
SCN18_25_1_16_R2_B_scaffold_152_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17856..18209)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLE8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62949.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_152_25
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18388..20373)
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QUQ0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG63506.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_152_26
unknown

Not on your lists

comp(20440..20670)
DNA (231bp) protein (77aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_152_27
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21024..22115)
DNA (1092bp) protein (364aa)
Phage integrase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SS47_NITWN
phage integrase
Phage integrase {ECO:0000313|EMBL:ABA04894.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_25_1_16_R2_B_scaffold_152_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22719..23051
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLR2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62835.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 218 in total

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