ggKbase home page

SCN18_10_11_15_R4_B_scaffold_1690

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_1690_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92..733
DNA (642bp) protein (214aa)
BetI family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI0003669422
HTH-type transcriptional regulator BetI {ECO:0000256|HAMAP-Rule:MF_00768}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
transcriptional repressor BetI
SCN18_10_11_15_R4_B_scaffold_1690_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

735..1373
DNA (639bp) protein (213aa)
Glutathione S-transferase n=1 Tax=Caulobacter sp. AP07 RepID=J3A5C5_9CAUL
Glutathione S-transferase {ECO:0000313|EMBL:KGF70770.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
glutathione S-transferase
SCN18_10_11_15_R4_B_scaffold_1690_3
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1380..3035
DNA (1656bp) protein (552aa)
Oxygen-dependent choline dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054588}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_00750};; Short=CHD {ECO:0000256|HAMAP-Rule:MF_00750};; EC=1.1.99.1 {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054587};; Betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
choline dehydrogenase (EC:1.1.99.1)
Choline dehydrogenase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FNU7_9RHIZ
SCN18_10_11_15_R4_B_scaffold_1690_4
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3111..3257
DNA (147bp) protein (49aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0R2_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53424.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1690_5
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3265..4728
DNA (1464bp) protein (488aa)
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
4-trimethylaminobutyraldehyde dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E97A8
betaine aldehyde dehydrogenase
SCN18_10_11_15_R4_B_scaffold_1690_6
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4734..6254)
DNA (1521bp) protein (507aa)
phosphomannomutase (EC:5.4.2.8)
phosphoglucomutase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030A082D
Phosphoglucomutase {ECO:0000313|EMBL:EZQ16880.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCN18_10_11_15_R4_B_scaffold_1690_trna_1
unknown

Not on your lists

6421..6494
DNA (74bp)
transferRNA Pro
SCN18_10_11_15_R4_B_scaffold_1690_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6616..7011
DNA (396bp) protein (132aa)
Restriction endonuclease n=1 Tax=Rhizobium sp. CF080 RepID=J2K0Z4_9RHIZ
HNH endonuclease {ECO:0000313|EMBL:EUB97252.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
restriction endonuclease
SCN18_10_11_15_R4_B_scaffold_1690_8
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7026..7340
DNA (315bp) protein (105aa)
SCN18_10_11_15_R4_B_scaffold_1690_9
unknown

Not on your lists

7333..7599
DNA (267bp) protein (89aa)

This feature has no annotations

SCN18_10_11_15_R4_B_scaffold_1690_10

Not on your lists

7604..7825
DNA (222bp) protein (74aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM20979.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_10_11_15_R4_B_scaffold_1690_11
unknown

Not on your lists

7822..7929
DNA (108bp) protein (36aa)

This feature has no annotations

SCN18_10_11_15_R4_B_scaffold_1690_12
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7926..8174
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQR5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56879.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1690_13
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8183..8431)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WL02_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EXL04842.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1690_14
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8669..8899)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000362987B
putative ABC transporter integral membrane component
Putative ABC transporter integral membrane component {ECO:0000313|EMBL:AEH87818.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCN18_10_11_15_R4_B_scaffold_1690_15
scnpilot_dereplicated_Phage_unknown_8, scnpilot_dereplicated_Phage_unknown_8, scnpilot_dereplicated_Phage_unknown_8, scnpilot_dereplicated_Phage_unknown_8, scnpilot_dereplicated_Phage_unknown_8, Phage

Not on your lists

comp(8896..9111)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FA84_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX61100.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1690_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9114..9389)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VFL5_RHOPX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKN08842.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_10_11_15_R4_B_scaffold_1690_17
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9391..10065)
DNA (675bp) protein (225aa)
Lysozyme {ECO:0000256|RuleBase:RU003788, ECO:0000313|EMBL:AHJ10723.1}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU003788};; TaxID=1458697 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Rhizobium phage vB_RglS_P106B.;"
Lysozyme n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QSA8_METTR
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1690_18
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10182..10559
DNA (378bp) protein (126aa)
4-amino-4-deoxy-L-arabinose transferase (EC:2.4.1.-)
Hypothetical membrane protein n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GPV0_CUPNN
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCN18_10_11_15_R4_B_scaffold_1690_19
unknown

Not on your lists

10626..10778
DNA (153bp) protein (51aa)

This feature has no annotations

SCN18_10_11_15_R4_B_scaffold_1690_20
unknown

Not on your lists

comp(10783..11388)
DNA (606bp) protein (202aa)

This feature has no annotations

SCN18_10_11_15_R4_B_scaffold_1690_21
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11390..12280)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N3J9_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EIK96039.1}; TaxID=1179778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M47T1.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_1690_22
Acinetobacter sp. NIPH 809_SCNpilot_P_inoc_Acinetobacter_41_9_partial, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12340..13938)
DNA (1599bp) protein (533aa)
Lysozyme {ECO:0000256|RuleBase:RU003788}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU003788};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Lysozyme n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PZA2_9RHIZ
hypothetical protein
Displaying 23 items

View Taxonomy