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SCN18_10_11_15_R4_B_scaffold_581

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_581_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..147)
DNA (147bp) protein (49aa)
electron transfer flavoprotein subunit beta n=1 Tax=Hoeflea sp. 108 RepID=UPI000369449A
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:EXL06598.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Electron transfer flavoprotein alpha/beta-subunit
SCN18_10_11_15_R4_B_scaffold_581_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(162..1271)
DNA (1110bp) protein (370aa)
Acyl-CoA dehydrogenase n=1 Tax=Caulobacter crescentus OR37 RepID=R0D180_CAUCE
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENZ82185.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
acyl-CoA dehydrogenase domain-containing protein
SCN18_10_11_15_R4_B_scaffold_581_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1268..2203)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Streptomyces sulphureus RepID=UPI00036C931C
Putative uncharacterized protein {ECO:0000313|EMBL:EFL07336.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
acyl-CoA dehydrogenase, C-terminal
SCN18_10_11_15_R4_B_scaffold_581_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2518..3531
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000381ECA5
Uncharacterized protein {ECO:0000313|EMBL:GAD24765.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
extra-cytoplasmic solute receptor family protein 29
SCN18_10_11_15_R4_B_scaffold_581_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3643..4056
DNA (414bp) protein (138aa)
UPI0003CF0AB1 related cluster n=1 Tax=unknown RepID=UPI0003CF0AB1
Membrane protein {ECO:0000313|EMBL:ESZ37326.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
Tripartite tricarboxylate transporter TctB family
SCN18_10_11_15_R4_B_scaffold_581_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4069..5580
DNA (1512bp) protein (504aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000378B7FF
Possible TctA subunit of the Tripartite Tricarboxylate Transport(TTT) Family
Tax=RBG_16_Acidobacteria_68_9_curated
SCN18_10_11_15_R4_B_scaffold_581_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5567..6715
DNA (1149bp) protein (383aa)
oxidoreductase n=1 Tax=Burkholderia ubonensis RepID=UPI00016A29DB
Oxidoreductase {ECO:0000313|EMBL:KEZ07264.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
NADH:flavin oxidoreductase, Old Yellow Enzyme family
SCN18_10_11_15_R4_B_scaffold_581_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6729..7466)
DNA (738bp) protein (246aa)
GntR domain protein n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A4X8_THECD
GntR domain protein {ECO:0000313|EMBL:ACY98147.1}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
GntR family transcriptional regulator
SCN18_10_11_15_R4_B_scaffold_581_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7546..8346)
DNA (801bp) protein (267aa)
AttB-like ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TVS8_9BRAD
AttB-like ABC transporter, permease protein {ECO:0000313|EMBL:CCE10566.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
AttB-like ABC transporter permease protein
SCN18_10_11_15_R4_B_scaffold_581_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8339..9193)
DNA (855bp) protein (285aa)
AttA2-like ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TVS7_9BRAD
AttA2-like ABC transporter, permease protein {ECO:0000313|EMBL:CCE10565.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
spermidine/putrescine ABC transporter permease protein
SCN18_10_11_15_R4_B_scaffold_581_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9190..10308)
DNA (1119bp) protein (373aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
spermidine/putrescine ABC transporter ATPase n=1 Tax=Rhizobium loti RepID=UPI000370A02B
spermidine/putrescine ABC transporter ATPase
SCN18_10_11_15_R4_B_scaffold_581_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10353..11414)
DNA (1062bp) protein (354aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PU80_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGF69058.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
ABC transporter substrate-binding protein
SCN18_10_11_15_R4_B_scaffold_581_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11576..12982)
DNA (1407bp) protein (469aa)
Amidase {ECO:0000313|EMBL:BAJ23960.1}; EC=3.5.1.4 {ECO:0000313|EMBL:BAJ23960.1};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Amidase n=1 Tax=uncultured bacterium RepID=E2RVD9_9BACT
amidase amiD
SCN18_10_11_15_R4_B_scaffold_581_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13175..14245)
DNA (1071bp) protein (357aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89PD5_BRADU
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAC48812.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCN18_10_11_15_R4_B_scaffold_581_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14284..15051)
DNA (768bp) protein (256aa)
Carboxymuconolactone decarboxylase n=1 Tax=Nitratireductor indicus C115 RepID=K2N2J8_9RHIZ
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EKF41623.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
putative gamma-carboxymuconolactone decarboxylase subunit
SCN18_10_11_15_R4_B_scaffold_581_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15073..15867)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TAN5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT70800.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
enoyl-CoA hydratase
SCN18_10_11_15_R4_B_scaffold_581_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16119..16871
DNA (753bp) protein (251aa)
2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase (EC:1.1.1.36 1.1.1.100 1.1.1.-)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F2C1B
Short-chain dehydrogenase {ECO:0000313|EMBL:ETW96379.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
SCN18_10_11_15_R4_B_scaffold_581_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16989..18131
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VG73_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ12849.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
yngJ; putative acyl-CoA dehydrogenase yngJ
SCN18_10_11_15_R4_B_scaffold_581_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18131..19087
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EMA6_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ82187.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
acyl-CoA dehydrogenase domain protein
SCN18_10_11_15_R4_B_scaffold_581_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19084..20061
DNA (978bp) protein (326aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000361DF02
2-dehydropantoate 2-reductase {ECO:0000313|EMBL:GAN77651.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCN18_10_11_15_R4_B_scaffold_581_21
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20054..21052
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ED15A4
Uncharacterized protein {ECO:0000313|EMBL:KJS05051.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
zinc-binding dehydrogenase family protein
SCN18_10_11_15_R4_B_scaffold_581_22
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21052..21645
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003775319
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS61838.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_10_11_15_R4_B_scaffold_581_23
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21638..22579)
DNA (942bp) protein (314aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Caulobacter crescentus OR37 RepID=R0EQB2_CAUCE
alpha/beta hydrolase
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:ENZ83187.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
SCN18_10_11_15_R4_B_scaffold_581_24
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22589..23761)
DNA (1173bp) protein (391aa)
acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Acidiphilium sp. PM RepID=F7S6G8_9PROT
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:EGO95260.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCN18_10_11_15_R4_B_scaffold_581_25
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23799..24683)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00036772C1
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCN18_10_11_15_R4_B_scaffold_581_26
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24716..26314)
DNA (1599bp) protein (533aa)
AMP-dependent synthetase and ligase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4C0_CONWI
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADB50492.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCN18_10_11_15_R4_B_scaffold_581_27
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26595..29696
DNA (3102bp) protein (1034aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036405D2
UvrD/REP helicase
SCN18_10_11_15_R4_B_scaffold_581_28
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29714..31018)
DNA (1305bp) protein (435aa)
C4-dicarboxylate ABC transporter n=1 Tax=Oceanicola sp. S124 RepID=UPI00025585F6
TRAP C4-dicarboxylate transporter permease DctM
TRAP-T family transporter, DctM (12 TMs) subunit {ECO:0000313|EMBL:ADZ71288.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_10_11_15_R4_B_scaffold_581_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31015..31533)
DNA (519bp) protein (173aa)
Putative TRAP-T family transporter, DctQ (4 TMs) subunit n=1 Tax=Rhizobium sp. RepID=L0NJ54_RHISP
Putative TRAP-T family transporter, DctQ (4 TMs) subunit {ECO:0000313|EMBL:CCF20919.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
TRAP transporter DctQ-like membrane protein
SCN18_10_11_15_R4_B_scaffold_581_30
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31622..32743)
DNA (1122bp) protein (374aa)
TRAP-T family transporter, DctP (Periplasmic binding) subunit n=1 Tax=Rhizobium sp. RepID=L0NII5_RHISP
C4-dicarboxylate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEQ10434.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
TRAP C4-dicarboxylate transporter subunit DctP
Displaying items 1-30 of 33 in total

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